miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8509 5' -42.8 NC_002169.1 + 111468 0.69 0.999977
Target:  5'- uACgACU-UUGUCGUCAUUAUCGUUGUu -3'
miRNA:   3'- -UGgUGGuAGUAGUAGUAAUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 104327 0.69 0.999968
Target:  5'- aACCAUCAUUAUCAUCAaacUCAa--- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUaauAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 71739 0.69 0.99994
Target:  5'- gUCACUGUCGUCGUCGUcaaUGUCuUUGUa -3'
miRNA:   3'- uGGUGGUAGUAGUAGUA---AUAGuAAUA- -5'
8509 5' -42.8 NC_002169.1 + 109385 0.7 0.999919
Target:  5'- gUCGuuGUCGUCGUCGUcGUCGUUAa -3'
miRNA:   3'- uGGUggUAGUAGUAGUAaUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 4535 0.7 0.999891
Target:  5'- -gCGUCGUCGUCGUCGUcGUCAUUAa -3'
miRNA:   3'- ugGUGGUAGUAGUAGUAaUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 108906 0.7 0.999891
Target:  5'- uGCgACCGUCGUCGUUGUcGUCGUc-- -3'
miRNA:   3'- -UGgUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 86752 0.7 0.999856
Target:  5'- gUCGUCGUCGUCGUCGUcGUCGUUGa -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAaUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 43015 0.7 0.99981
Target:  5'- gGCCACCGUCAgCGUCAaUAgacUCAUg-- -3'
miRNA:   3'- -UGGUGGUAGUaGUAGUaAU---AGUAaua -5'
8509 5' -42.8 NC_002169.1 + 116995 0.71 0.999753
Target:  5'- cACCuuuGCCAUCGUCAUUAUgGUCGa--- -3'
miRNA:   3'- -UGG---UGGUAGUAGUAGUAaUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 31363 0.71 0.999681
Target:  5'- aACCACgGUCGUCA-CAUUGUUGUa-- -3'
miRNA:   3'- -UGGUGgUAGUAGUaGUAAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 24874 0.71 0.999681
Target:  5'- gUCGUCGUCGUCGUCGUcGUCGUUAa -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAaUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 1454 0.71 0.999681
Target:  5'- cACCGCCGUCGcugccacuuUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGU---------AGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 47478 0.71 0.999341
Target:  5'- uUCAUCGUCAUCGUCGUcuUUAUUAa -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAauAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 76459 0.71 0.999341
Target:  5'- aAUCAaaaCGUCGUCGUCGUUGUUAUUu- -3'
miRNA:   3'- -UGGUg--GUAGUAGUAGUAAUAGUAAua -5'
8509 5' -42.8 NC_002169.1 + 4268 0.72 0.999174
Target:  5'- cACCACCGUCGauaUCGUCAUUAa------ -3'
miRNA:   3'- -UGGUGGUAGU---AGUAGUAAUaguaaua -5'
8509 5' -42.8 NC_002169.1 + 61596 0.72 0.999174
Target:  5'- cGCCACCuccgucguaAUCGUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGG---------UAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 1478 0.73 0.998091
Target:  5'- cGCCGCCGUCAUCGUC----UCAa--- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGuaauAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 91854 0.73 0.998091
Target:  5'- -aCGCCGUCGcCAUCGUUGUUGUUGc -3'
miRNA:   3'- ugGUGGUAGUaGUAGUAAUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 74748 0.73 0.997683
Target:  5'- uCCGCCGUCGUCGccaUCGUUGUUggUGUc -3'
miRNA:   3'- uGGUGGUAGUAGU---AGUAAUAGuaAUA- -5'
8509 5' -42.8 NC_002169.1 + 32578 0.73 0.997683
Target:  5'- cACCGCUGUCGUCGUCGUcgccGUCAa--- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAa---UAGUaaua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.