Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8510 | 3' | -54.5 | NC_002169.1 | + | 53496 | 0.66 | 0.907701 |
Target: 5'- aAAUCGACgggGGUGUggagaUCGUaaccCGCGGCGc -3' miRNA: 3'- -UUAGCUGa--CCGCA-----AGCAga--GCGUCGU- -5' |
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8510 | 3' | -54.5 | NC_002169.1 | + | 92729 | 0.66 | 0.901286 |
Target: 5'- gAGUCGACgacGGCGcggaaCGUCUUGC-GCAu -3' miRNA: 3'- -UUAGCUGa--CCGCaa---GCAGAGCGuCGU- -5' |
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8510 | 3' | -54.5 | NC_002169.1 | + | 62228 | 0.66 | 0.901286 |
Target: 5'- gAAUCGACggcGGCGUcuuuUCGUCgacUCGaagaAGCAa -3' miRNA: 3'- -UUAGCUGa--CCGCA----AGCAG---AGCg---UCGU- -5' |
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8510 | 3' | -54.5 | NC_002169.1 | + | 55200 | 0.67 | 0.894624 |
Target: 5'- uGAUCGGCuaUGGUGUUCGUUUcCGCGa-- -3' miRNA: 3'- -UUAGCUG--ACCGCAAGCAGA-GCGUcgu -5' |
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8510 | 3' | -54.5 | NC_002169.1 | + | 95987 | 0.67 | 0.88772 |
Target: 5'- uGGUCGACggcGGCGacaugUUGUCgUGCGGCGa -3' miRNA: 3'- -UUAGCUGa--CCGCa----AGCAGaGCGUCGU- -5' |
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8510 | 3' | -54.5 | NC_002169.1 | + | 62990 | 0.68 | 0.841479 |
Target: 5'- cAUCGuCcGGCGgcCGUCgUCGCAGUAg -3' miRNA: 3'- uUAGCuGaCCGCaaGCAG-AGCGUCGU- -5' |
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8510 | 3' | -54.5 | NC_002169.1 | + | 124375 | 0.68 | 0.838964 |
Target: 5'- aGAUCGGaaaUGGCGUcgauggugaguaugUCGUCuUCGuCGGCAu -3' miRNA: 3'- -UUAGCUg--ACCGCA--------------AGCAG-AGC-GUCGU- -5' |
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8510 | 3' | -54.5 | NC_002169.1 | + | 34818 | 0.7 | 0.729285 |
Target: 5'- cGAUUGAgUUGGCGUUUGUUUUGguGCu -3' miRNA: 3'- -UUAGCU-GACCGCAAGCAGAGCguCGu -5' |
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8510 | 3' | -54.5 | NC_002169.1 | + | 95251 | 1.07 | 0.004394 |
Target: 5'- gAAUCGACUGGCGUUCGUCUCGCAGCAa -3' miRNA: 3'- -UUAGCUGACCGCAAGCAGAGCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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