miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 3' -44.1 NC_002169.1 + 53239 0.85 0.599462
Target:  5'- aUUUCaaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAGc-GUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11634 0.85 0.576594
Target:  5'- ---aGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUACUAgAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11127 0.85 0.565229
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagcGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105285 0.87 0.49858
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAg -5'
8512 3' -44.1 NC_002169.1 + 52855 0.91 0.30074
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 71827 0.91 0.30074
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10900 0.93 0.236547
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119514 0.8 0.838249
Target:  5'- ---aGUACAcGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 120236 0.78 0.881203
Target:  5'- -aUUGUaauACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAGCG---UGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 104964 0.68 0.999875
Target:  5'- -aUCGUuuCAUagucaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGCGu-GUAc----UAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105696 0.68 0.999836
Target:  5'- -aUUGUaauACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaAGCG---UGUaCUAGAAACGAAAGuAG- -5'
8512 3' -44.1 NC_002169.1 + 42385 0.69 0.999721
Target:  5'- uUUUCcaaaCACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAGc---GUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105516 0.69 0.999542
Target:  5'- -gUCgGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaAG-CGUGUAcUAgAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 12270 0.7 0.999269
Target:  5'- gUUCGCACAUGuUCUguaucGCUUgCAUUa -3'
miRNA:   3'- aAAGCGUGUACuAGAaa---CGAAaGUAG- -5'
8512 3' -44.1 NC_002169.1 + 53096 0.7 0.999087
Target:  5'- uUUUCaUACucaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAGcGUGuacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105605 0.72 0.995698
Target:  5'- uUUUCauaCACA--AUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAGc--GUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11761 0.73 0.985615
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagcGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 42061 0.75 0.970261
Target:  5'- ---aGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105037 0.75 0.966858
Target:  5'- -aUUGCAuCAgccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGCGU-GUa-------CUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 52974 0.76 0.940607
Target:  5'- ---aGUACAccAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUacUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.