Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8513 | 5' | -43.5 | NC_002169.1 | + | 105372 | 0.82 | 0.78866 |
Target: 5'- aCGAucuUGGAcaaaAGCAAAGAUCGUGUAUUAAa -3' miRNA: 3'- -GCU---ACUU----UCGUUUCUAGCACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 71670 | 0.82 | 0.77838 |
Target: 5'- gGAcGAAAGCAAAGAUCaUGUACUAGa -3' miRNA: 3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 52698 | 0.82 | 0.77838 |
Target: 5'- gGAcGAAAGCAAAGAUCaUGUACUAGa -3' miRNA: 3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 10977 | 0.83 | 0.746615 |
Target: 5'- uCGAcGAAAGCAAAcAUCGUGUACUAGa -3' miRNA: 3'- -GCUaCUUUCGUUUcUAGCACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 105115 | 0.83 | 0.73576 |
Target: 5'- gGAcGAAAGCAAAGAUCaUGUACUGAa -3' miRNA: 3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 53156 | 0.83 | 0.73576 |
Target: 5'- gGAcGAAAGCAAAGAUCaUGUACUGAa -3' miRNA: 3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 11196 | 0.84 | 0.713727 |
Target: 5'- gGAcGAAAGCAAAGAUCGaGUACUAGa -3' miRNA: 3'- gCUaCUUUCGUUUCUAGCaCAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 10678 | 0.84 | 0.702574 |
Target: 5'- uCGAUGAAAGCAAAGAUCGUuGUGg--- -3' miRNA: 3'- -GCUACUUUCGUUUCUAGCA-CAUgauu -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 11069 | 0.84 | 0.691347 |
Target: 5'- uCGAcGAAAGCAAAGAUCaUGUACUAGa -3' miRNA: 3'- -GCUaCUUUCGUUUCUAGcACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 10742 | 0.85 | 0.657347 |
Target: 5'- uCGAcGAAAGCAAAGAUCaUGUACUAAa -3' miRNA: 3'- -GCUaCUUUCGUUUCUAGcACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 53283 | 0.85 | 0.645948 |
Target: 5'- uCGAcGAAAGCAAAGAUCaUGUACUGAa -3' miRNA: 3'- -GCUaCUUUCGUUUCUAGcACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 53060 | 0.85 | 0.634535 |
Target: 5'- gGAUGAAAGCAAAGAUgaUGUACUAAa -3' miRNA: 3'- gCUACUUUCGUUUCUAgcACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 119635 | 0.87 | 0.566376 |
Target: 5'- gGAcGAAAGCAAAGAUCGUGUACc-- -3' miRNA: 3'- gCUaCUUUCGUUUCUAGCACAUGauu -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 11096 | 0.87 | 0.566376 |
Target: 5'- gGAcGAAAGCAAAGAUCGUGUACc-- -3' miRNA: 3'- gCUaCUUUCGUUUCUAGCACAUGauu -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 52942 | 0.87 | 0.566376 |
Target: 5'- gGAcGAAAGCAAAGAUCGUGUACc-- -3' miRNA: 3'- gCUaCUUUCGUUUCUAGCACAUGauu -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 104988 | 0.88 | 0.532941 |
Target: 5'- uCGAUGAAAGCAAAGAUCaUGUGCg-- -3' miRNA: 3'- -GCUACUUUCGUUUCUAGcACAUGauu -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 10551 | 0.88 | 0.532941 |
Target: 5'- aGAUGAAAGCAAAcAUUGUGUACUAAa -3' miRNA: 3'- gCUACUUUCGUUUcUAGCACAUGAUU- -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 11604 | 0.89 | 0.468454 |
Target: 5'- gGAcGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- gCUaCUUUCGUUUCUAGCACAUGAUu -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 120072 | 0.91 | 0.398646 |
Target: 5'- uCGAcGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- -GCUaCUUUCGUUUCUAGCACAUGAUu -5' |
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8513 | 5' | -43.5 | NC_002169.1 | + | 42349 | 0.93 | 0.319307 |
Target: 5'- uCGAUGAAAGCAAAGAUCaUGUACUAc -3' miRNA: 3'- -GCUACUUUCGUUUCUAGcACAUGAUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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