miRNA: 3'- gCgAUAGCGGUUU-------GGGUGGUUUGcau -5'
miRNA: 3'- gcgaUAGC-GGUUugGGUGGUUUGCAU- -5'
miRNA: 3'- -GCGA----------UAGCGGUUUGGGUGG-----UUugCAU- -5'
miRNA: 3'- gCGAUAGCGGU---UUGGGUGguUUGCau -5'
miRNA: 3'- -GCGAUAGCGGUUUGGGUGGUUUGCAU- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8515 | 5' | -50.9 | NC_002169.1 | + | 125272 | 0.72 | 0.812847 |
|
Target: 5'- uGgUGUCGCCGAGaacgaacCCCACCAAACu-- -3' miRNA: 3'- gCgAUAGCGGUUU-------GGGUGGUUUGcau -5' |
|||||||
| 8515 | 5' | -50.9 | NC_002169.1 | + | 27702 | 0.73 | 0.804521 |
|
Target: 5'- ---aAUCGaCCGGugCCGCCGAGCGUGc -3' miRNA: 3'- gcgaUAGC-GGUUugGGUGGUUUGCAU- -5' |
|||||||
| 8515 | 5' | -50.9 | NC_002169.1 | + | 133020 | 0.75 | 0.66174 |
|
Target: 5'- uCGCUgaauuuauuuGUCGCCGAACCCACUuacucGGugGUGu -3' miRNA: 3'- -GCGA----------UAGCGGUUUGGGUGG-----UUugCAU- -5' |
|||||||
| 8515 | 5' | -50.9 | NC_002169.1 | + | 19208 | 0.75 | 0.66174 |
|
Target: 5'- gGCUAUCGCUAucgGGCCCACguAGCGc- -3' miRNA: 3'- gCGAUAGCGGU---UUGGGUGguUUGCau -5' |
|||||||
| 8515 | 5' | -50.9 | NC_002169.1 | + | 107865 | 1.08 | 0.008919 |
|
Target: 5'- uCGCUAUCGCCAAACCCACCAAACGUAa -3' miRNA: 3'- -GCGAUAGCGGUUUGGGUGGUUUGCAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home