miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8516 3' -56.5 NC_002169.1 + 22617 0.66 0.869715
Target:  5'- cACGggGCc--AUCGGCGACGCCGa--- -3'
miRNA:   3'- -UGCa-CGauaUAGCCGCUGCGGCggau -5'
8516 3' -56.5 NC_002169.1 + 6265 0.67 0.812352
Target:  5'- -aGUGUaacGUCGGCGACGUCGUUa- -3'
miRNA:   3'- ugCACGauaUAGCCGCUGCGGCGGau -5'
8516 3' -56.5 NC_002169.1 + 30476 0.67 0.803423
Target:  5'- aACGUGag----CGGCGGCGUCGUCg- -3'
miRNA:   3'- -UGCACgauauaGCCGCUGCGGCGGau -5'
8516 3' -56.5 NC_002169.1 + 34508 0.67 0.794334
Target:  5'- --uUGCgg---CGGCGGCGCCGUCg- -3'
miRNA:   3'- ugcACGauauaGCCGCUGCGGCGGau -5'
8516 3' -56.5 NC_002169.1 + 76737 0.67 0.775715
Target:  5'- aGCaUGCaugAUcguaGUCGGCGuCGCUGCCUAu -3'
miRNA:   3'- -UGcACGa--UA----UAGCCGCuGCGGCGGAU- -5'
8516 3' -56.5 NC_002169.1 + 42810 0.68 0.766203
Target:  5'- cUGUGCguaGUCaaaGGCGGCGCCGCg-- -3'
miRNA:   3'- uGCACGauaUAG---CCGCUGCGGCGgau -5'
8516 3' -56.5 NC_002169.1 + 34674 0.68 0.746822
Target:  5'- -aGU-CaAUAUCGGCGACGgCGCCg- -3'
miRNA:   3'- ugCAcGaUAUAGCCGCUGCgGCGGau -5'
8516 3' -56.5 NC_002169.1 + 36930 0.68 0.736972
Target:  5'- uCGUGCgagGUCGGCuACGUgGCCg- -3'
miRNA:   3'- uGCACGauaUAGCCGcUGCGgCGGau -5'
8516 3' -56.5 NC_002169.1 + 32450 0.68 0.727028
Target:  5'- cGCGUGaUAUGcaauuggcCGGCGACGCCGUgUAc -3'
miRNA:   3'- -UGCACgAUAUa-------GCCGCUGCGGCGgAU- -5'
8516 3' -56.5 NC_002169.1 + 108433 0.69 0.717
Target:  5'- gACGUGCUGU-UCGcucGCGACGUguaCGCCa- -3'
miRNA:   3'- -UGCACGAUAuAGC---CGCUGCG---GCGGau -5'
8516 3' -56.5 NC_002169.1 + 97071 0.69 0.686509
Target:  5'- gACGcUGCcgacgGUGUCGaCGACGCUGCCg- -3'
miRNA:   3'- -UGC-ACGa----UAUAGCcGCUGCGGCGGau -5'
8516 3' -56.5 NC_002169.1 + 30309 0.7 0.655601
Target:  5'- -gGUGgUAuUGUCGaCGACGCCGCCg- -3'
miRNA:   3'- ugCACgAU-AUAGCcGCUGCGGCGGau -5'
8516 3' -56.5 NC_002169.1 + 25985 0.7 0.645248
Target:  5'- ---aGCcg-GUCGGCGGCGCCGgCUGc -3'
miRNA:   3'- ugcaCGauaUAGCCGCUGCGGCgGAU- -5'
8516 3' -56.5 NC_002169.1 + 49528 0.7 0.622445
Target:  5'- aACGUGUUucagaucaaCGGCGuCGCCGCCa- -3'
miRNA:   3'- -UGCACGAuaua-----GCCGCuGCGGCGGau -5'
8516 3' -56.5 NC_002169.1 + 125178 0.71 0.593488
Target:  5'- gGCGguugggGCaGUAUCGGCGAgGgCCGCUUGu -3'
miRNA:   3'- -UGCa-----CGaUAUAGCCGCUgC-GGCGGAU- -5'
8516 3' -56.5 NC_002169.1 + 107994 1.06 0.003206
Target:  5'- aACGUGCUAUAUCGGCGACGCCGCCUAu -3'
miRNA:   3'- -UGCACGAUAUAGCCGCUGCGGCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.