Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 113458 | 0.69 | 0.99833 |
Target: 5'- -aUGGACGcgUCGCGuCCAcguAGCAGCu -3' miRNA: 3'- caAUUUGCuaAGUGCcGGU---UUGUCGc -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 44232 | 0.69 | 0.997982 |
Target: 5'- --cGAACGAUgcCACGGCCGGAUAa-- -3' miRNA: 3'- caaUUUGCUAa-GUGCCGGUUUGUcgc -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 45891 | 0.69 | 0.997574 |
Target: 5'- -aUGAugGuggUgACGGCgGGACAGCa -3' miRNA: 3'- caAUUugCua-AgUGCCGgUUUGUCGc -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 27134 | 0.69 | 0.996492 |
Target: 5'- -gUAGGCGGgcgUCgggaagACGGCCAAgauucggGCGGCGg -3' miRNA: 3'- caAUUUGCUa--AG------UGCCGGUU-------UGUCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 49723 | 0.7 | 0.994962 |
Target: 5'- ----cACGAUUCACGucuacauugcccccGCCAuuGGCGGCGa -3' miRNA: 3'- caauuUGCUAAGUGC--------------CGGU--UUGUCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 129498 | 0.7 | 0.993341 |
Target: 5'- uUUGAuguACGAUUCGCGGCCGucuucggauuuucGuuuGCGGCa -3' miRNA: 3'- cAAUU---UGCUAAGUGCCGGU-------------U---UGUCGc -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 17092 | 0.71 | 0.986764 |
Target: 5'- --gGAACgGAUauugcguucaUCACGGCUcAACAGCGg -3' miRNA: 3'- caaUUUG-CUA----------AGUGCCGGuUUGUCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 96378 | 0.72 | 0.984954 |
Target: 5'- -cUGAACGAU--GCGGCC--ACGGCGc -3' miRNA: 3'- caAUUUGCUAagUGCCGGuuUGUCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 106366 | 0.72 | 0.978387 |
Target: 5'- -gUAAAUGucUCGCGGCCAGuCGGUGa -3' miRNA: 3'- caAUUUGCuaAGUGCCGGUUuGUCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 111836 | 0.73 | 0.975785 |
Target: 5'- ----cGCG-UUCACGGCCAucgcCAGCGu -3' miRNA: 3'- caauuUGCuAAGUGCCGGUuu--GUCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 37703 | 0.73 | 0.963076 |
Target: 5'- --cGAACGGUUCuCGGaCAAACAGUGu -3' miRNA: 3'- caaUUUGCUAAGuGCCgGUUUGUCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 110251 | 0.74 | 0.959283 |
Target: 5'- ---cGGCG-UUCACGGCCAAAagGGCGu -3' miRNA: 3'- caauUUGCuAAGUGCCGGUUUg-UCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 125329 | 0.74 | 0.955231 |
Target: 5'- cGUUGA-CGAgagUC-CGGCCgAAGCGGCGa -3' miRNA: 3'- -CAAUUuGCUa--AGuGCCGG-UUUGUCGC- -5' |
|||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 107951 | 1.09 | 0.022102 |
Target: 5'- gGUUAAACGAUUCACGGCCAAACAGCGc -3' miRNA: 3'- -CAAUUUGCUAAGUGCCGGUUUGUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home