Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8517 | 3' | -45 | NC_002169.1 | + | 81812 | 0.67 | 0.999964 |
Target: 5'- -cGACGACACCGac-GACGAGAUUa- -3' miRNA: 3'- ucUUGCUGUGGCgauUUGUUUUGAgg -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 39943 | 0.67 | 0.999964 |
Target: 5'- --uACGACGCUGCcgaccUAAACGAuuucauGCUCUa -3' miRNA: 3'- ucuUGCUGUGGCG-----AUUUGUUu-----UGAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 48336 | 0.67 | 0.999964 |
Target: 5'- --cGCGAUGCCGCUAucuCGAu-UUCCg -3' miRNA: 3'- ucuUGCUGUGGCGAUuu-GUUuuGAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 18357 | 0.67 | 0.999951 |
Target: 5'- -uGACGACACCgaugaGCUAGACAcaaAGAUUUg -3' miRNA: 3'- ucUUGCUGUGG-----CGAUUUGU---UUUGAGg -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 50149 | 0.67 | 0.999951 |
Target: 5'- ----gGACACCGCaUAuacCAAAugUCCu -3' miRNA: 3'- ucuugCUGUGGCG-AUuu-GUUUugAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 124123 | 0.67 | 0.999951 |
Target: 5'- cGGGGCauCAUCGCgaGAACgAGAGCUCCg -3' miRNA: 3'- -UCUUGcuGUGGCGa-UUUG-UUUUGAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 134454 | 0.68 | 0.999888 |
Target: 5'- cAGAGCGACG-CGCaUGAGCAuguguuggggucuCUCCa -3' miRNA: 3'- -UCUUGCUGUgGCG-AUUUGUuuu----------GAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 84563 | 0.68 | 0.999849 |
Target: 5'- cAGcACGACACCGCgc--CGGAAUUUg -3' miRNA: 3'- -UCuUGCUGUGGCGauuuGUUUUGAGg -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 108147 | 0.68 | 0.999804 |
Target: 5'- cGAGCGAUGCgUGCUAcACAAAuguguGCUCg -3' miRNA: 3'- uCUUGCUGUG-GCGAUuUGUUU-----UGAGg -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 37824 | 0.68 | 0.999804 |
Target: 5'- uGAACGACACCGUgccucGGAUgcAAUUCa -3' miRNA: 3'- uCUUGCUGUGGCGa----UUUGuuUUGAGg -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 77656 | 0.68 | 0.999799 |
Target: 5'- ---uCGACGCCGUUAAACAAAugauuggcggggcAUUCUu -3' miRNA: 3'- ucuuGCUGUGGCGAUUUGUUU-------------UGAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 88554 | 0.69 | 0.999747 |
Target: 5'- cGGAugGGCuuuACUGC--GACAcuGCUCCu -3' miRNA: 3'- -UCUugCUG---UGGCGauUUGUuuUGAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 2943 | 0.69 | 0.999747 |
Target: 5'- cGAGCG-UGCCGUcgAGACAcGACUCUu -3' miRNA: 3'- uCUUGCuGUGGCGa-UUUGUuUUGAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 88852 | 0.69 | 0.999747 |
Target: 5'- gAGAGCGGUGCagGCgagAAACGauGAACUCCa -3' miRNA: 3'- -UCUUGCUGUGg-CGa--UUUGU--UUUGAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 60375 | 0.69 | 0.999677 |
Target: 5'- gAGAucauCGACAUCGCcgccgcaaUGAGCAAAAUcgCCa -3' miRNA: 3'- -UCUu---GCUGUGGCG--------AUUUGUUUUGa-GG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 122924 | 0.69 | 0.99959 |
Target: 5'- -cGACGACGCCGaacaaaUGAGCAcuaguaaaAAACUCg -3' miRNA: 3'- ucUUGCUGUGGCg-----AUUUGU--------UUUGAGg -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 41341 | 0.69 | 0.999483 |
Target: 5'- cGGGCGAUGCCGa-GAACAauccAAACUCg -3' miRNA: 3'- uCUUGCUGUGGCgaUUUGU----UUUGAGg -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 25685 | 0.7 | 0.999353 |
Target: 5'- aGGAGCGACggcgaACCGCcGGGCGucGCcgCCa -3' miRNA: 3'- -UCUUGCUG-----UGGCGaUUUGUuuUGa-GG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 22061 | 0.7 | 0.999195 |
Target: 5'- cGGAACGcgACCGCgAAACGuacacGCUCCu -3' miRNA: 3'- -UCUUGCugUGGCGaUUUGUuu---UGAGG- -5' |
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8517 | 3' | -45 | NC_002169.1 | + | 52436 | 0.7 | 0.998509 |
Target: 5'- cGGuACGACAUguuuaCUAAACAAAAUUCCg -3' miRNA: 3'- -UCuUGCUGUGgc---GAUUUGUUUUGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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