Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8517 | 5' | -56.1 | NC_002169.1 | + | 35836 | 0.72 | 0.631914 |
Target: 5'- -aGAGaugcCCGAcggcaGCGGGCGUCGUUUCg -3' miRNA: 3'- ggCUCcaa-GGCU-----UGCCCGCAGCAGAG- -5' |
|||||||
8517 | 5' | -56.1 | NC_002169.1 | + | 39348 | 0.74 | 0.522297 |
Target: 5'- gCCGA--UUCUGAACGGaGCGUCG-CUCa -3' miRNA: 3'- -GGCUccAAGGCUUGCC-CGCAGCaGAG- -5' |
|||||||
8517 | 5' | -56.1 | NC_002169.1 | + | 108056 | 1.12 | 0.001901 |
Target: 5'- aCCGAGGUUCCGAACGGGCGUCGUCUCg -3' miRNA: 3'- -GGCUCCAAGGCUUGCCCGCAGCAGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home