miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8518 5' -51.5 NC_002169.1 + 128979 0.66 0.991555
Target:  5'- aGUCGAGAGAgGCGgguaCGCaGUuuUGUUCGa -3'
miRNA:   3'- -CAGCUCUUUgUGCaa--GCG-CA--GCGAGC- -5'
8518 5' -51.5 NC_002169.1 + 134626 0.66 0.991439
Target:  5'- aUgGAGAGaccccacACAUGcucaugCGCGUCGCUCu -3'
miRNA:   3'- cAgCUCUU-------UGUGCaa----GCGCAGCGAGc -5'
8518 5' -51.5 NC_002169.1 + 53448 0.66 0.988412
Target:  5'- gGUCGGGAAACGCGgccaaguaucaggUCGuCGcCGC-CGc -3'
miRNA:   3'- -CAGCUCUUUGUGCa------------AGC-GCaGCGaGC- -5'
8518 5' -51.5 NC_002169.1 + 89089 0.66 0.987501
Target:  5'- uUCGAGAGACGUGUaUCGCGuUUGCa-- -3'
miRNA:   3'- cAGCUCUUUGUGCA-AGCGC-AGCGagc -5'
8518 5' -51.5 NC_002169.1 + 73610 0.66 0.984057
Target:  5'- aGUCGAGAacguguacaacAACACGaugaGCGU-GCUCGc -3'
miRNA:   3'- -CAGCUCU-----------UUGUGCaag-CGCAgCGAGC- -5'
8518 5' -51.5 NC_002169.1 + 124100 0.67 0.982086
Target:  5'- --aGAGcgccguCACGUUCGUGUCGCg-- -3'
miRNA:   3'- cagCUCuuu---GUGCAAGCGCAGCGagc -5'
8518 5' -51.5 NC_002169.1 + 84925 0.67 0.982086
Target:  5'- --aGAGAGACACGUgcuuucuacCGUGUCGUcacguuUCGa -3'
miRNA:   3'- cagCUCUUUGUGCAa--------GCGCAGCG------AGC- -5'
8518 5' -51.5 NC_002169.1 + 19258 0.67 0.979938
Target:  5'- cGUUGAGGAugACGUaucgguaacaaUUGCGUaCGC-CGg -3'
miRNA:   3'- -CAGCUCUUugUGCA-----------AGCGCA-GCGaGC- -5'
8518 5' -51.5 NC_002169.1 + 59503 0.67 0.979938
Target:  5'- uGUCGAGGAugGC-UUCGaCGgCGaCUCGg -3'
miRNA:   3'- -CAGCUCUUugUGcAAGC-GCaGC-GAGC- -5'
8518 5' -51.5 NC_002169.1 + 109712 0.67 0.975074
Target:  5'- uUCGAGcGACGCGaaCGUGUUuCUCGa -3'
miRNA:   3'- cAGCUCuUUGUGCaaGCGCAGcGAGC- -5'
8518 5' -51.5 NC_002169.1 + 107015 0.68 0.962866
Target:  5'- -gCGAGAAAacuuuGCGUUCGUGUuCGCgaUCGa -3'
miRNA:   3'- caGCUCUUUg----UGCAAGCGCA-GCG--AGC- -5'
8518 5' -51.5 NC_002169.1 + 112092 0.69 0.93255
Target:  5'- uUCGAaacGACAauuauUUCGCGUCGCUCGu -3'
miRNA:   3'- cAGCUcu-UUGUgc---AAGCGCAGCGAGC- -5'
8518 5' -51.5 NC_002169.1 + 29112 0.71 0.896859
Target:  5'- aGUCGAGua--GCGUggaGCGUgCGCUCGu -3'
miRNA:   3'- -CAGCUCuuugUGCAag-CGCA-GCGAGC- -5'
8518 5' -51.5 NC_002169.1 + 86112 0.78 0.535696
Target:  5'- aUCGAGGAACACGUUCaCGUUGCg-- -3'
miRNA:   3'- cAGCUCUUUGUGCAAGcGCAGCGagc -5'
8518 5' -51.5 NC_002169.1 + 109874 1.1 0.007264
Target:  5'- uGUCGAGAAACACGUUCGCGUCGCUCGa -3'
miRNA:   3'- -CAGCUCUUUGUGCAAGCGCAGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.