miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8519 3' -55.3 NC_002169.1 + 36140 0.66 0.909404
Target:  5'- --uCGCCCgucucaaagUUUGGCCG--GACGUCGg -3'
miRNA:   3'- aguGCGGGa--------AAACCGGCacUUGCGGC- -5'
8519 3' -55.3 NC_002169.1 + 107788 0.67 0.890008
Target:  5'- -uGCGCUg-UUUGGCCGUGAAuCGUUu -3'
miRNA:   3'- agUGCGGgaAAACCGGCACUU-GCGGc -5'
8519 3' -55.3 NC_002169.1 + 26959 0.67 0.868537
Target:  5'- cCGcCGCCCgaaucUUGGCCGUcuucccGACGCCc -3'
miRNA:   3'- aGU-GCGGGaa---AACCGGCAc-----UUGCGGc -5'
8519 3' -55.3 NC_002169.1 + 32454 0.68 0.836912
Target:  5'- aUCACGCgUgauaugcaaUUGGCCGgcGACGCCGu -3'
miRNA:   3'- -AGUGCGgGaa-------AACCGGCacUUGCGGC- -5'
8519 3' -55.3 NC_002169.1 + 96422 0.68 0.817326
Target:  5'- aUUGCGCaCCUUcUUGuuguagagccggguGUCGUGGACGCCGu -3'
miRNA:   3'- -AGUGCG-GGAA-AAC--------------CGGCACUUGCGGC- -5'
8519 3' -55.3 NC_002169.1 + 56403 0.72 0.613524
Target:  5'- -gACGCCCgcaUUGGUCGUgguagcGAugGCCGu -3'
miRNA:   3'- agUGCGGGaa-AACCGGCA------CUugCGGC- -5'
8519 3' -55.3 NC_002169.1 + 56982 0.72 0.603216
Target:  5'- uUCGcCGCCgccgUGGCCGcuuUGGACGCCGc -3'
miRNA:   3'- -AGU-GCGGgaaaACCGGC---ACUUGCGGC- -5'
8519 3' -55.3 NC_002169.1 + 111678 0.72 0.603216
Target:  5'- -gACGCUggcgaUGGCCGUGAACGCgGg -3'
miRNA:   3'- agUGCGGgaaa-ACCGGCACUUGCGgC- -5'
8519 3' -55.3 NC_002169.1 + 22145 0.74 0.492744
Target:  5'- aUUACGCCCUgacuucGGCaGUGAGCGCgGg -3'
miRNA:   3'- -AGUGCGGGAaaa---CCGgCACUUGCGgC- -5'
8519 3' -55.3 NC_002169.1 + 110379 0.81 0.198093
Target:  5'- uUUACGCCCUccaaaUUGGCCGUGGACGUg- -3'
miRNA:   3'- -AGUGCGGGAa----AACCGGCACUUGCGgc -5'
8519 3' -55.3 NC_002169.1 + 110412 1.09 0.003176
Target:  5'- aUCACGCCCUUUUGGCCGUGAACGCCGc -3'
miRNA:   3'- -AGUGCGGGAAAACCGGCACUUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.