miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
852 3' -60.6 NC_000898.1 + 4342 0.66 0.754184
Target:  5'- gCCucauaGGUGGGGcauUCgaGGCCGCCCUCu -3'
miRNA:   3'- -GGucug-CCGUCUC---AGa-CCGGCGGGAG- -5'
852 3' -60.6 NC_000898.1 + 157509 0.66 0.754184
Target:  5'- gCCucauaGGUGGGGcauUCgaGGCCGCCCUCu -3'
miRNA:   3'- -GGucug-CCGUCUC---AGa-CCGGCGGGAG- -5'
852 3' -60.6 NC_000898.1 + 785 0.66 0.715433
Target:  5'- -aAGACGauGCAGGGUgUGGCCggcacgcGCCgUCa -3'
miRNA:   3'- ggUCUGC--CGUCUCAgACCGG-------CGGgAG- -5'
852 3' -60.6 NC_000898.1 + 153953 0.66 0.715433
Target:  5'- -aAGACGauGCAGGGUgUGGCCggcacgcGCCgUCa -3'
miRNA:   3'- ggUCUGC--CGUCUCAgACCGG-------CGGgAG- -5'
852 3' -60.6 NC_000898.1 + 123671 0.66 0.706758
Target:  5'- uCCcGACGGCAGAGguugcGGUUugGCCUUCg -3'
miRNA:   3'- -GGuCUGCCGUCUCaga--CCGG--CGGGAG- -5'
852 3' -60.6 NC_000898.1 + 62974 0.67 0.638105
Target:  5'- aUCGGACGGUgauGGGUUUGGCCauGCCg-- -3'
miRNA:   3'- -GGUCUGCCGu--CUCAGACCGG--CGGgag -5'
852 3' -60.6 NC_000898.1 + 4497 0.69 0.559475
Target:  5'- gCC--GCGGCAGGGUCgGcGCCaGCCCaUCg -3'
miRNA:   3'- -GGucUGCCGUCUCAGaC-CGG-CGGG-AG- -5'
852 3' -60.6 NC_000898.1 + 157665 0.69 0.559475
Target:  5'- gCC--GCGGCAGGGUCgGcGCCaGCCCaUCg -3'
miRNA:   3'- -GGucUGCCGUCUCAGaC-CGG-CGGG-AG- -5'
852 3' -60.6 NC_000898.1 + 7195 0.72 0.404981
Target:  5'- gCCAGACGGCAGA-UCUuGCCGUuaUCg -3'
miRNA:   3'- -GGUCUGCCGUCUcAGAcCGGCGggAG- -5'
852 3' -60.6 NC_000898.1 + 160362 0.72 0.404981
Target:  5'- gCCAGACGGCAGA-UCUuGCCGUuaUCg -3'
miRNA:   3'- -GGUCUGCCGUCUcAGAcCGGCGggAG- -5'
852 3' -60.6 NC_000898.1 + 6658 1.11 0.000866
Target:  5'- gCCAGACGGCAGAGUCUGGCCGCCCUCa -3'
miRNA:   3'- -GGUCUGCCGUCUCAGACCGGCGGGAG- -5'
852 3' -60.6 NC_000898.1 + 159826 1.11 0.000866
Target:  5'- gCCAGACGGCAGAGUCUGGCCGCCCUCa -3'
miRNA:   3'- -GGUCUGCCGUCUCAGACCGGCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.