miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8521 3' -46.9 NC_002169.1 + 49956 0.66 0.999879
Target:  5'- uGUCGuCGcCGaGCGAUAuaguuuUGGGAUCGa -3'
miRNA:   3'- gUAGCuGCuGC-CGUUAUu-----AUCCUAGU- -5'
8521 3' -46.9 NC_002169.1 + 127960 0.66 0.999879
Target:  5'- --gCGGCGGCGGCGucGUAAUuuuGAUUAa -3'
miRNA:   3'- guaGCUGCUGCCGU--UAUUAuc-CUAGU- -5'
8521 3' -46.9 NC_002169.1 + 113332 0.66 0.999843
Target:  5'- uGUCGAgGACguGGCGcguuuUGuUAGGAUCAu -3'
miRNA:   3'- gUAGCUgCUG--CCGUu----AUuAUCCUAGU- -5'
8521 3' -46.9 NC_002169.1 + 62608 0.66 0.999843
Target:  5'- uGUCGcUGACGaGCGAUGugGUcggcAGGAUCAu -3'
miRNA:   3'- gUAGCuGCUGC-CGUUAU--UA----UCCUAGU- -5'
8521 3' -46.9 NC_002169.1 + 84525 0.66 0.999843
Target:  5'- -uUCGACGcggGCGGCGAaAGUagAGGGUUu -3'
miRNA:   3'- guAGCUGC---UGCCGUUaUUA--UCCUAGu -5'
8521 3' -46.9 NC_002169.1 + 130486 0.67 0.999579
Target:  5'- --aCGACGACGGgAGg---AGGAUUc -3'
miRNA:   3'- guaGCUGCUGCCgUUauuaUCCUAGu -5'
8521 3' -46.9 NC_002169.1 + 133652 0.67 0.999579
Target:  5'- aCGUCGACgcacuuguuGACGGCAAUAcUGGcuaGAUUAc -3'
miRNA:   3'- -GUAGCUG---------CUGCCGUUAUuAUC---CUAGU- -5'
8521 3' -46.9 NC_002169.1 + 44694 0.67 0.999579
Target:  5'- uGUCGGCGGCGGCGAaAA-AGGc--- -3'
miRNA:   3'- gUAGCUGCUGCCGUUaUUaUCCuagu -5'
8521 3' -46.9 NC_002169.1 + 22610 0.67 0.999579
Target:  5'- cCAUCGGCGACGcCGAggaacGGAUUAu -3'
miRNA:   3'- -GUAGCUGCUGCcGUUauuauCCUAGU- -5'
8521 3' -46.9 NC_002169.1 + 21644 0.67 0.999339
Target:  5'- aGUCGuACGugaGCGGCGccaGGUGGGAUCc -3'
miRNA:   3'- gUAGC-UGC---UGCCGUua-UUAUCCUAGu -5'
8521 3' -46.9 NC_002169.1 + 92728 0.67 0.999339
Target:  5'- aGUCGACGACGGCGc-----GGAa-- -3'
miRNA:   3'- gUAGCUGCUGCCGUuauuauCCUagu -5'
8521 3' -46.9 NC_002169.1 + 11905 0.67 0.99918
Target:  5'- aGUCGGCGACaGUAAaAGUGaGAUCAu -3'
miRNA:   3'- gUAGCUGCUGcCGUUaUUAUcCUAGU- -5'
8521 3' -46.9 NC_002169.1 + 1435 0.68 0.99899
Target:  5'- ---aGACGACGGCAucgGUGGUggAGGAg-- -3'
miRNA:   3'- guagCUGCUGCCGU---UAUUA--UCCUagu -5'
8521 3' -46.9 NC_002169.1 + 15323 0.68 0.99899
Target:  5'- --aCGACGGCGGCGGUGGcGGcGG-CAa -3'
miRNA:   3'- guaGCUGCUGCCGUUAUUaUC-CUaGU- -5'
8521 3' -46.9 NC_002169.1 + 9595 0.68 0.998493
Target:  5'- aCGUCGACGAUGGgGGUAAUGaaaaauUCAa -3'
miRNA:   3'- -GUAGCUGCUGCCgUUAUUAUccu---AGU- -5'
8521 3' -46.9 NC_002169.1 + 15284 0.68 0.998493
Target:  5'- --aUGAUGGCGGCAaaaAUAAUAGcAUCGa -3'
miRNA:   3'- guaGCUGCUGCCGU---UAUUAUCcUAGU- -5'
8521 3' -46.9 NC_002169.1 + 102740 0.68 0.998493
Target:  5'- --gCGGCGGCGGCGAcg--AGGA-CAa -3'
miRNA:   3'- guaGCUGCUGCCGUUauuaUCCUaGU- -5'
8521 3' -46.9 NC_002169.1 + 95988 0.68 0.998493
Target:  5'- gGUCGACGGCGGCGAc-AUGuuGUCGu -3'
miRNA:   3'- gUAGCUGCUGCCGUUauUAUccUAGU- -5'
8521 3' -46.9 NC_002169.1 + 4119 0.68 0.998493
Target:  5'- aUAUCGACGguggugguggugGCGGCGGUGAaacuGGAUUu -3'
miRNA:   3'- -GUAGCUGC------------UGCCGUUAUUau--CCUAGu -5'
8521 3' -46.9 NC_002169.1 + 58715 0.68 0.998176
Target:  5'- gCGUCGuCGGCGcCGAUAGUAGuuGAUCGa -3'
miRNA:   3'- -GUAGCuGCUGCcGUUAUUAUC--CUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.