miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8522 5' -57.1 NC_002169.1 + 81523 0.66 0.841149
Target:  5'- cUUUGCAuCGgcUCGAGcuGGCGcCGCUGUUg -3'
miRNA:   3'- aAAGCGU-GC--AGCUC--CCGCuGCGACAG- -5'
8522 5' -57.1 NC_002169.1 + 77905 0.66 0.832865
Target:  5'- --cCGCGCGUCGccGaCGACGC-GUCg -3'
miRNA:   3'- aaaGCGUGCAGCucCcGCUGCGaCAG- -5'
8522 5' -57.1 NC_002169.1 + 46616 0.66 0.832865
Target:  5'- gUUCGUcgGUCGAGGuaGCGACGCUc-- -3'
miRNA:   3'- aAAGCGugCAGCUCC--CGCUGCGAcag -5'
8522 5' -57.1 NC_002169.1 + 15991 0.67 0.760624
Target:  5'- -aUUGCggcaGCGUCGGcGGCggucacgacGACGCUGUCg -3'
miRNA:   3'- aaAGCG----UGCAGCUcCCG---------CUGCGACAG- -5'
8522 5' -57.1 NC_002169.1 + 98277 0.68 0.731379
Target:  5'- -gUCaCACGUCGcGcGGCGugGCUGa- -3'
miRNA:   3'- aaAGcGUGCAGCuC-CCGCugCGACag -5'
8522 5' -57.1 NC_002169.1 + 60133 0.68 0.701349
Target:  5'- -gUCGgACGaaUCGAcGGCGACGCcGUCc -3'
miRNA:   3'- aaAGCgUGC--AGCUcCCGCUGCGaCAG- -5'
8522 5' -57.1 NC_002169.1 + 2450 0.69 0.688156
Target:  5'- --aCGC-UGUCGAGGuGaucguuguuuuuaaCGACGCUGUCg -3'
miRNA:   3'- aaaGCGuGCAGCUCC-C--------------GCUGCGACAG- -5'
8522 5' -57.1 NC_002169.1 + 43282 0.69 0.660524
Target:  5'- --cUGCAaucUGUUGAGGGCGAaggugaCGUUGUCg -3'
miRNA:   3'- aaaGCGU---GCAGCUCCCGCU------GCGACAG- -5'
8522 5' -57.1 NC_002169.1 + 51098 0.69 0.650238
Target:  5'- --gCGCAgGUCGGGauUGAUGCUGUCg -3'
miRNA:   3'- aaaGCGUgCAGCUCccGCUGCGACAG- -5'
8522 5' -57.1 NC_002169.1 + 130778 0.7 0.62963
Target:  5'- gUUCGCuCGaagCGuGGGCagGACGCUGUUg -3'
miRNA:   3'- aAAGCGuGCa--GCuCCCG--CUGCGACAG- -5'
8522 5' -57.1 NC_002169.1 + 77745 0.73 0.432854
Target:  5'- gUUCGaCGCGUCGucGGCGACGCg--- -3'
miRNA:   3'- aAAGC-GUGCAGCucCCGCUGCGacag -5'
8522 5' -57.1 NC_002169.1 + 114548 1.07 0.002334
Target:  5'- cUUUCGCACGUCGAGGGCGACGCUGUCg -3'
miRNA:   3'- -AAAGCGUGCAGCUCCCGCUGCGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.