miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8523 3' -49.6 NC_002169.1 + 117815 0.66 0.996115
Target:  5'- gCUGCGgcGGCGGCG--GUUGUCu-- -3'
miRNA:   3'- aGAUGCauUCGCUGCaaCGACAGcau -5'
8523 3' -49.6 NC_002169.1 + 96310 0.66 0.996115
Target:  5'- ---uUGUuGGCGACGUUGCgGUCa-- -3'
miRNA:   3'- agauGCAuUCGCUGCAACGaCAGcau -5'
8523 3' -49.6 NC_002169.1 + 101922 0.66 0.995437
Target:  5'- aUUGCGUAugguGGCGACGUUGCgcucucCGg- -3'
miRNA:   3'- aGAUGCAU----UCGCUGCAACGaca---GCau -5'
8523 3' -49.6 NC_002169.1 + 26547 0.67 0.992806
Target:  5'- --aAUGUuuGCGACGacGUUGUCGUGu -3'
miRNA:   3'- agaUGCAuuCGCUGCaaCGACAGCAU- -5'
8523 3' -49.6 NC_002169.1 + 15983 0.67 0.991463
Target:  5'- --aGCGUcGGCGGCGgucacgacgacGCUGUCGUc -3'
miRNA:   3'- agaUGCAuUCGCUGCaa---------CGACAGCAu -5'
8523 3' -49.6 NC_002169.1 + 63520 0.68 0.985872
Target:  5'- uUCUugaGCuUGGGCGGC-UUGCUGUCGa- -3'
miRNA:   3'- -AGA---UGcAUUCGCUGcAACGACAGCau -5'
8523 3' -49.6 NC_002169.1 + 118939 0.68 0.97733
Target:  5'- --aACGgcGGCGGCGUcgucGUUGUCGUc -3'
miRNA:   3'- agaUGCauUCGCUGCAa---CGACAGCAu -5'
8523 3' -49.6 NC_002169.1 + 95989 0.69 0.968786
Target:  5'- gUCgACGgcGGCGACa-UGUUGUCGUGc -3'
miRNA:   3'- -AGaUGCauUCGCUGcaACGACAGCAU- -5'
8523 3' -49.6 NC_002169.1 + 127950 0.69 0.961948
Target:  5'- --gGCGgcGGCGGCGgcgGCggcGUCGUAa -3'
miRNA:   3'- agaUGCauUCGCUGCaa-CGa--CAGCAU- -5'
8523 3' -49.6 NC_002169.1 + 30476 0.7 0.940496
Target:  5'- --aACGUGAGCGGCGgcGUcGUCGa- -3'
miRNA:   3'- agaUGCAUUCGCUGCaaCGaCAGCau -5'
8523 3' -49.6 NC_002169.1 + 74020 0.76 0.710108
Target:  5'- uUUUACGUcGGCGACGaggcccgUGCUGUCGa- -3'
miRNA:   3'- -AGAUGCAuUCGCUGCa------ACGACAGCau -5'
8523 3' -49.6 NC_002169.1 + 116015 1.08 0.011796
Target:  5'- aUCUACGUAAGCGACGUUGCUGUCGUAc -3'
miRNA:   3'- -AGAUGCAUUCGCUGCAACGACAGCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.