miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8523 5' -52.7 NC_002169.1 + 34664 0.66 0.977229
Target:  5'- ----gGCGACGGCGCCGCCg---CCGc -3'
miRNA:   3'- gcgugUGUUGUUGUGGCGGaacaGGC- -5'
8523 5' -52.7 NC_002169.1 + 37872 0.66 0.974668
Target:  5'- gGCAU-CGACAcCACCGCCgaGUaugCCGa -3'
miRNA:   3'- gCGUGuGUUGUuGUGGCGGaaCA---GGC- -5'
8523 5' -52.7 NC_002169.1 + 26039 0.66 0.974668
Target:  5'- gCGCGcCACAACGGCGuuGgUUcGUCCa -3'
miRNA:   3'- -GCGU-GUGUUGUUGUggCgGAaCAGGc -5'
8523 5' -52.7 NC_002169.1 + 12750 0.66 0.974668
Target:  5'- aGCGCcuuCGACGACugCGCCaacGUCa- -3'
miRNA:   3'- gCGUGu--GUUGUUGugGCGGaa-CAGgc -5'
8523 5' -52.7 NC_002169.1 + 33828 0.66 0.974401
Target:  5'- uCGUugACAaaauuuuACGACGCCG-CUUGUCg- -3'
miRNA:   3'- -GCGugUGU-------UGUUGUGGCgGAACAGgc -5'
8523 5' -52.7 NC_002169.1 + 15973 0.66 0.973861
Target:  5'- gCGguCACGACGACGCUGUCgucacaccaauuguUUGUgCGa -3'
miRNA:   3'- -GCguGUGUUGUUGUGGCGG--------------AACAgGC- -5'
8523 5' -52.7 NC_002169.1 + 19117 0.66 0.971903
Target:  5'- aGCcCAcCAGCAGCACCGCaugaUUGagaCCGu -3'
miRNA:   3'- gCGuGU-GUUGUUGUGGCGg---AACa--GGC- -5'
8523 5' -52.7 NC_002169.1 + 35166 0.66 0.968928
Target:  5'- aGCGCGCAauACAACuaagugccaccGCCGCCaUGUUUc -3'
miRNA:   3'- gCGUGUGU--UGUUG-----------UGGCGGaACAGGc -5'
8523 5' -52.7 NC_002169.1 + 47320 0.66 0.965734
Target:  5'- cCGCAauCACGGCGcucccaACGCCGCCgagcGUCaCGu -3'
miRNA:   3'- -GCGU--GUGUUGU------UGUGGCGGaa--CAG-GC- -5'
8523 5' -52.7 NC_002169.1 + 30312 0.66 0.965403
Target:  5'- gGUAUuguCGACGACGCCGCCgcucacgUUG-CCGc -3'
miRNA:   3'- gCGUGu--GUUGUUGUGGCGG-------AACaGGC- -5'
8523 5' -52.7 NC_002169.1 + 59967 0.67 0.958669
Target:  5'- aCGUGgACGGCGuCGCCGUCgauucGUCCGa -3'
miRNA:   3'- -GCGUgUGUUGUuGUGGCGGaa---CAGGC- -5'
8523 5' -52.7 NC_002169.1 + 81698 0.67 0.958669
Target:  5'- uCGCGCcaGCAACAGCGgCGCCagcucgagCCGa -3'
miRNA:   3'- -GCGUG--UGUUGUUGUgGCGGaaca----GGC- -5'
8523 5' -52.7 NC_002169.1 + 22547 0.67 0.954385
Target:  5'- cCGUACAUGGCGACGCCGagcgcaaUCUU-UCCGg -3'
miRNA:   3'- -GCGUGUGUUGUUGUGGC-------GGAAcAGGC- -5'
8523 5' -52.7 NC_002169.1 + 25814 0.67 0.946297
Target:  5'- cCGCACaaucuaugcGCAGcCGGCGCCGCCga--CCGg -3'
miRNA:   3'- -GCGUG---------UGUU-GUUGUGGCGGaacaGGC- -5'
8523 5' -52.7 NC_002169.1 + 107993 0.67 0.940731
Target:  5'- aCGUGCuauauCGGCGACGCCGCCUauaaucagagCCGa -3'
miRNA:   3'- -GCGUGu----GUUGUUGUGGCGGAaca-------GGC- -5'
8523 5' -52.7 NC_002169.1 + 56824 0.68 0.936821
Target:  5'- gGCACGCGuACAACgACCGUaUUGUCg- -3'
miRNA:   3'- gCGUGUGU-UGUUG-UGGCGgAACAGgc -5'
8523 5' -52.7 NC_002169.1 + 68754 0.68 0.926342
Target:  5'- uCGUGCACAaacACGACACCGCCa------ -3'
miRNA:   3'- -GCGUGUGU---UGUUGUGGCGGaacaggc -5'
8523 5' -52.7 NC_002169.1 + 35739 0.68 0.920723
Target:  5'- gGCACGCugcucgucguGCAAUAgCCGCCgcgcaguaacauUUGUCCGu -3'
miRNA:   3'- gCGUGUGu---------UGUUGU-GGCGG------------AACAGGC- -5'
8523 5' -52.7 NC_002169.1 + 39273 0.69 0.908732
Target:  5'- uGCACcguCGACGACGCCGuCCgcGUUCa -3'
miRNA:   3'- gCGUGu--GUUGUUGUGGC-GGaaCAGGc -5'
8523 5' -52.7 NC_002169.1 + 14124 0.69 0.902362
Target:  5'- aCGCAUcaACAAUAAUACCGUCUUuUCgGg -3'
miRNA:   3'- -GCGUG--UGUUGUUGUGGCGGAAcAGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.