miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8524 3' -52.2 NC_002169.1 + 53320 0.66 0.981326
Target:  5'- -cGACGGCGcCGCGGGuuacgaucuccACACCCccGuCGa -3'
miRNA:   3'- guUUGCCGU-GCGCUU-----------UGUGGGuaC-GC- -5'
8524 3' -52.2 NC_002169.1 + 32532 0.66 0.976673
Target:  5'- -cAACGGUACGCGccGCAgCC--GCGg -3'
miRNA:   3'- guUUGCCGUGCGCuuUGUgGGuaCGC- -5'
8524 3' -52.2 NC_002169.1 + 51929 0.66 0.97642
Target:  5'- uGGACGGCACGCugauuGAGACGCgaaguggCCAaGUGu -3'
miRNA:   3'- gUUUGCCGUGCG-----CUUUGUG-------GGUaCGC- -5'
8524 3' -52.2 NC_002169.1 + 96392 0.66 0.974051
Target:  5'- --cACGGCGCGCGAGugGCagaaUcguucgagagagGUGCGc -3'
miRNA:   3'- guuUGCCGUGCGCUUugUGg---G------------UACGC- -5'
8524 3' -52.2 NC_002169.1 + 57779 0.66 0.970331
Target:  5'- ---uCGGCgucggacauuucgaACGCGAAGCGCgCcgGCGu -3'
miRNA:   3'- guuuGCCG--------------UGCGCUUUGUGgGuaCGC- -5'
8524 3' -52.2 NC_002169.1 + 126316 0.67 0.968177
Target:  5'- aCGGGCGGC-CGCuuGACGCUCAacgaaGCGa -3'
miRNA:   3'- -GUUUGCCGuGCGcuUUGUGGGUa----CGC- -5'
8524 3' -52.2 NC_002169.1 + 48189 0.67 0.967221
Target:  5'- -uAGCGGCAuCGCGGGcAgACCCGacgacgaucucgacUGCGa -3'
miRNA:   3'- guUUGCCGU-GCGCUU-UgUGGGU--------------ACGC- -5'
8524 3' -52.2 NC_002169.1 + 115929 0.67 0.964911
Target:  5'- --cGCGGCAaGCGAGACGgCC--GCGa -3'
miRNA:   3'- guuUGCCGUgCGCUUUGUgGGuaCGC- -5'
8524 3' -52.2 NC_002169.1 + 77767 0.67 0.961416
Target:  5'- --cGCGGCACGCGAuggugcAGCACCaa--CGa -3'
miRNA:   3'- guuUGCCGUGCGCU------UUGUGGguacGC- -5'
8524 3' -52.2 NC_002169.1 + 21635 0.67 0.961416
Target:  5'- uGAGCGGCGCcagGUGGGAucCGCUCGUGuCGg -3'
miRNA:   3'- gUUUGCCGUG---CGCUUU--GUGGGUAC-GC- -5'
8524 3' -52.2 NC_002169.1 + 112182 0.68 0.940338
Target:  5'- aGAACGGCGCuuGCGuuuCGCCCGucauUGCc -3'
miRNA:   3'- gUUUGCCGUG--CGCuuuGUGGGU----ACGc -5'
8524 3' -52.2 NC_002169.1 + 1573 0.69 0.90674
Target:  5'- -cGGCGGCGCGUaaGAuuguuccGCACCCAUGg- -3'
miRNA:   3'- guUUGCCGUGCG--CUu------UGUGGGUACgc -5'
8524 3' -52.2 NC_002169.1 + 24533 0.69 0.900253
Target:  5'- -cGACGGCGCGaucgccaaCGuguACACCCAUGaCGc -3'
miRNA:   3'- guUUGCCGUGC--------GCuu-UGUGGGUAC-GC- -5'
8524 3' -52.2 NC_002169.1 + 80388 0.7 0.879321
Target:  5'- uGAGCGGCAuCGUGA-GCAUUgAUGCGc -3'
miRNA:   3'- gUUUGCCGU-GCGCUuUGUGGgUACGC- -5'
8524 3' -52.2 NC_002169.1 + 80150 0.74 0.653742
Target:  5'- --cAUGuGCACGCGAGaAUugCCGUGCGa -3'
miRNA:   3'- guuUGC-CGUGCGCUU-UGugGGUACGC- -5'
8524 3' -52.2 NC_002169.1 + 116176 1.09 0.006152
Target:  5'- aCAAACGGCACGCGAAACACCCAUGCGc -3'
miRNA:   3'- -GUUUGCCGUGCGCUUUGUGGGUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.