miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8526 3' -52.5 NC_002169.1 + 38085 0.66 0.976213
Target:  5'- aCAACUGUUGgagauguGCGAUCGaaaaauucUACACUGCg- -3'
miRNA:   3'- -GUUGACAAC-------UGCUGGC--------AUGUGGCGgu -5'
8526 3' -52.5 NC_002169.1 + 118445 0.66 0.971007
Target:  5'- aGAUUGUacGGCGGCauugauUACGCCGCCGg -3'
miRNA:   3'- gUUGACAa-CUGCUGgc----AUGUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 6545 0.66 0.96796
Target:  5'- -uGCUGUUGACGA-CGUuC-CCGCUg -3'
miRNA:   3'- guUGACAACUGCUgGCAuGuGGCGGu -5'
8526 3' -52.5 NC_002169.1 + 12686 0.66 0.96796
Target:  5'- --uUUGgcGAauuuagccuCGACCGUcaACGCCGCCAc -3'
miRNA:   3'- guuGACaaCU---------GCUGGCA--UGUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 57870 0.67 0.961199
Target:  5'- aCGAUUGaucaagGGCGACagaagCGUGCACUGCCc -3'
miRNA:   3'- -GUUGACaa----CUGCUG-----GCAUGUGGCGGu -5'
8526 3' -52.5 NC_002169.1 + 4274 0.67 0.953508
Target:  5'- ---aUGUUGuCG-CCGU-CGCCGCCGu -3'
miRNA:   3'- guugACAACuGCuGGCAuGUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 74205 0.67 0.949303
Target:  5'- aGACUGUuugcggUGACGACaauuuCGCUGCCGa -3'
miRNA:   3'- gUUGACA------ACUGCUGgcau-GUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 42986 0.68 0.935202
Target:  5'- uCAugUGgacaGCGAUCGcgGCGCCGCCu -3'
miRNA:   3'- -GUugACaac-UGCUGGCa-UGUGGCGGu -5'
8526 3' -52.5 NC_002169.1 + 14113 0.68 0.917663
Target:  5'- uGACagUGUUGAgguuauuguacaGAUCGUGCACCGUCAa -3'
miRNA:   3'- gUUG--ACAACUg-----------CUGGCAUGUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 92273 0.69 0.906662
Target:  5'- -uGCUGUUGGCGAUgCGuUugACCGCa- -3'
miRNA:   3'- guUGACAACUGCUG-GC-AugUGGCGgu -5'
8526 3' -52.5 NC_002169.1 + 97097 0.69 0.893494
Target:  5'- uCGACggUGUUGACGGCgaugCGgucgACGCUGCCGa -3'
miRNA:   3'- -GUUG--ACAACUGCUG----GCa---UGUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 15806 0.7 0.856422
Target:  5'- aCAAUUGgugUGACGACagcgucguCGUGacCGCCGCCGa -3'
miRNA:   3'- -GUUGACa--ACUGCUG--------GCAU--GUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 91869 0.7 0.856422
Target:  5'- uGACUGUcGACGACg--ACGCCGUCGc -3'
miRNA:   3'- gUUGACAaCUGCUGgcaUGUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 122153 0.72 0.767229
Target:  5'- ----cGUUGACGcuauuGCCGU-CGCCGCCAc -3'
miRNA:   3'- guugaCAACUGC-----UGGCAuGUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 86365 0.75 0.623319
Target:  5'- aAACUGUUGAgCGACUGc-CACCGUCAa -3'
miRNA:   3'- gUUGACAACU-GCUGGCauGUGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 97249 0.76 0.550247
Target:  5'- aGACUGUUGGCGagaagaaaGCCGUucucgACGCCGCUg -3'
miRNA:   3'- gUUGACAACUGC--------UGGCA-----UGUGGCGGu -5'
8526 3' -52.5 NC_002169.1 + 134336 0.8 0.371125
Target:  5'- aCAuUUGUUGACGACgCGUAC-CCGCCGa -3'
miRNA:   3'- -GUuGACAACUGCUG-GCAUGuGGCGGU- -5'
8526 3' -52.5 NC_002169.1 + 123477 1.08 0.006133
Target:  5'- gCAACUGUUGACGACCGUACACCGCCAu -3'
miRNA:   3'- -GUUGACAACUGCUGGCAUGUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.