miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8528 5' -46.2 NC_002169.1 + 106428 0.66 0.999944
Target:  5'- cGGACCuCGGCAuugcGGCCGguguaaaaAAAGccGGCg -3'
miRNA:   3'- -CCUGG-GCCGUuu--UUGGU--------UUUCaaCUG- -5'
8528 5' -46.2 NC_002169.1 + 86238 0.66 0.9999
Target:  5'- aGGcCCCGGCcAGuuuGCCAAAuacauauUUGACa -3'
miRNA:   3'- -CCuGGGCCGuUUu--UGGUUUuc-----AACUG- -5'
8528 5' -46.2 NC_002169.1 + 69217 0.66 0.9999
Target:  5'- uGGAUCCGGU--GAACgAGAGGUUu-- -3'
miRNA:   3'- -CCUGGGCCGuuUUUGgUUUUCAAcug -5'
8528 5' -46.2 NC_002169.1 + 9301 0.66 0.9999
Target:  5'- aGGugUCGGCAAAGgugaacACCAAucGc-GACg -3'
miRNA:   3'- -CCugGGCCGUUUU------UGGUUuuCaaCUG- -5'
8528 5' -46.2 NC_002169.1 + 45262 0.67 0.999829
Target:  5'- cGGCgCCGGCGAAGACaaauuuCAAuuGUUGGa -3'
miRNA:   3'- cCUG-GGCCGUUUUUG------GUUuuCAACUg -5'
8528 5' -46.2 NC_002169.1 + 57004 0.67 0.999779
Target:  5'- uGGACgccgCCGGCugAGGAACguuuAGGUUGACg -3'
miRNA:   3'- -CCUG----GGCCG--UUUUUGguu-UUCAACUG- -5'
8528 5' -46.2 NC_002169.1 + 133546 0.67 0.999639
Target:  5'- cGACUCGGCcguGGGAUagu-GGUUGACg -3'
miRNA:   3'- cCUGGGCCGu--UUUUGguuuUCAACUG- -5'
8528 5' -46.2 NC_002169.1 + 55992 0.68 0.999426
Target:  5'- cGugUCGGCAAuGACgCGAAAGauUUGGCc -3'
miRNA:   3'- cCugGGCCGUUuUUG-GUUUUC--AACUG- -5'
8528 5' -46.2 NC_002169.1 + 90632 0.68 0.999113
Target:  5'- aGACCCGGCAuc-ACCAu-AGUcuuguagcUGAUg -3'
miRNA:   3'- cCUGGGCCGUuuuUGGUuuUCA--------ACUG- -5'
8528 5' -46.2 NC_002169.1 + 113561 0.69 0.998374
Target:  5'- aGGACUCGGaCAAua--CGAAGGUUGuCg -3'
miRNA:   3'- -CCUGGGCC-GUUuuugGUUUUCAACuG- -5'
8528 5' -46.2 NC_002169.1 + 100565 0.7 0.996016
Target:  5'- cGuCCCGGCGAGcGCCGucGAGUUG-Cu -3'
miRNA:   3'- cCuGGGCCGUUUuUGGUu-UUCAACuG- -5'
8528 5' -46.2 NC_002169.1 + 104429 0.72 0.983274
Target:  5'- cGACUCGGUAuuGACgAAGAGUUugcGACg -3'
miRNA:   3'- cCUGGGCCGUuuUUGgUUUUCAA---CUG- -5'
8528 5' -46.2 NC_002169.1 + 112278 0.72 0.98112
Target:  5'- aGGACgCCGGCGAcuGCCGccugAGAGgcGAUc -3'
miRNA:   3'- -CCUG-GGCCGUUuuUGGU----UUUCaaCUG- -5'
8528 5' -46.2 NC_002169.1 + 39224 0.72 0.978764
Target:  5'- cGGGCCgGGCGAugcgauGCCAGAuggucuGGUUGGa -3'
miRNA:   3'- -CCUGGgCCGUUuu----UGGUUU------UCAACUg -5'
8528 5' -46.2 NC_002169.1 + 186 1.14 0.012651
Target:  5'- gGGACCCGGCAAAAACCAAAAGUUGACu -3'
miRNA:   3'- -CCUGGGCCGUUUUUGGUUUUCAACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.