miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 3' -44.7 NC_002169.1 + 72264 0.66 0.999997
Target:  5'- ------uUGUUUGgaGACGAugACGGGACa -3'
miRNA:   3'- cuauuauGCAAAUg-CUGCU--UGCCCUG- -5'
8530 3' -44.7 NC_002169.1 + 40300 0.66 0.999997
Target:  5'- ------uUGUUUACGauuGCGuACGGGGCg -3'
miRNA:   3'- cuauuauGCAAAUGC---UGCuUGCCCUG- -5'
8530 3' -44.7 NC_002169.1 + 65280 0.66 0.999995
Target:  5'- --gAAUACGacgACGACGAcgacgacgACGGcGGCg -3'
miRNA:   3'- cuaUUAUGCaaaUGCUGCU--------UGCC-CUG- -5'
8530 3' -44.7 NC_002169.1 + 45889 0.66 0.999993
Target:  5'- uGAUGAUG-GUgg-UGACG-GCGGGACa -3'
miRNA:   3'- -CUAUUAUgCAaauGCUGCuUGCCCUG- -5'
8530 3' -44.7 NC_002169.1 + 86923 0.67 0.99999
Target:  5'- cGAaAGUACGUUUcaACGACGAcgACGacGACg -3'
miRNA:   3'- -CUaUUAUGCAAA--UGCUGCU--UGCc-CUG- -5'
8530 3' -44.7 NC_002169.1 + 91823 0.67 0.999981
Target:  5'- --aAAUGCGUUUAC-ACGGGCGGc-- -3'
miRNA:   3'- cuaUUAUGCAAAUGcUGCUUGCCcug -5'
8530 3' -44.7 NC_002169.1 + 92929 0.67 0.999981
Target:  5'- uGAUGggACGUUUGCGAgGA--GGcGACg -3'
miRNA:   3'- -CUAUuaUGCAAAUGCUgCUugCC-CUG- -5'
8530 3' -44.7 NC_002169.1 + 76796 0.67 0.999974
Target:  5'- -----gACGUUUGCGGCGAACucuuGACc -3'
miRNA:   3'- cuauuaUGCAAAUGCUGCUUGcc--CUG- -5'
8530 3' -44.7 NC_002169.1 + 1330 0.68 0.999885
Target:  5'- cGAUGAcgGCGgcgGCGGCG-GCGGcGGCg -3'
miRNA:   3'- -CUAUUa-UGCaaaUGCUGCuUGCC-CUG- -5'
8530 3' -44.7 NC_002169.1 + 55318 0.69 0.999804
Target:  5'- --cGAUugGUUUggcggugacgACGACGAcaGCGGcGGCg -3'
miRNA:   3'- cuaUUAugCAAA----------UGCUGCU--UGCC-CUG- -5'
8530 3' -44.7 NC_002169.1 + 124924 0.69 0.999677
Target:  5'- cGGUGGggGCGgcgGCGGCGGcgGCGGcGACa -3'
miRNA:   3'- -CUAUUa-UGCaaaUGCUGCU--UGCC-CUG- -5'
8530 3' -44.7 NC_002169.1 + 57023 0.7 0.999195
Target:  5'- -----aACGUUUAgguUGACGAcauuggaaGCGGGACg -3'
miRNA:   3'- cuauuaUGCAAAU---GCUGCU--------UGCCCUG- -5'
8530 3' -44.7 NC_002169.1 + 108409 0.73 0.991883
Target:  5'- --cAAUugGUaUACGACaaucAACGGGACg -3'
miRNA:   3'- cuaUUAugCAaAUGCUGc---UUGCCCUG- -5'
8530 3' -44.7 NC_002169.1 + 127936 0.75 0.971577
Target:  5'- uGGUGAUGCGag-GCGGCGGcgGCGGcGGCg -3'
miRNA:   3'- -CUAUUAUGCaaaUGCUGCU--UGCC-CUG- -5'
8530 3' -44.7 NC_002169.1 + 121870 0.81 0.803198
Target:  5'- -----aGCGUUUugGcCGGACGGGACa -3'
miRNA:   3'- cuauuaUGCAAAugCuGCUUGCCCUG- -5'
8530 3' -44.7 NC_002169.1 + 4242 1.13 0.022202
Target:  5'- cGAUAAUACGUUUACGACGAACGGGACg -3'
miRNA:   3'- -CUAUUAUGCAAAUGCUGCUUGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.