Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8530 | 5' | -60.2 | NC_002169.1 | + | 9738 | 0.7 | 0.493013 |
Target: 5'- -cGUCGaCGUCGUCGUCGUCuccauuGUUGUCu -3' miRNA: 3'- aaCAGCgGCAGCGGCGGCAG------CAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 70704 | 0.7 | 0.465306 |
Target: 5'- -cGUCGUCGUCGgCGggcUUGUCGUCGUg -3' miRNA: 3'- aaCAGCGGCAGCgGC---GGCAGCAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 7024 | 0.7 | 0.45625 |
Target: 5'- gUUGUCGUCGUCGCauugGCUG-CGgCGUCa -3' miRNA: 3'- -AACAGCGGCAGCGg---CGGCaGCaGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 40729 | 0.71 | 0.421015 |
Target: 5'- aUGUCGCCGUCGCCGCaauacUUGUUc -3' miRNA: 3'- aACAGCGGCAGCGGCGgcagcAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 62143 | 0.71 | 0.404023 |
Target: 5'- gUGUCGCCGUUGaugaUGUCaUUGUCGUCg -3' miRNA: 3'- aACAGCGGCAGCg---GCGGcAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 14330 | 0.71 | 0.421015 |
Target: 5'- ---aUGCCGgcgaauaUGUCGCCGUUGUCGUCg -3' miRNA: 3'- aacaGCGGCa------GCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 48140 | 0.72 | 0.348093 |
Target: 5'- ---cCGCCGUCGgCGCCGUCGU-GUg -3' miRNA: 3'- aacaGCGGCAGCgGCGGCAGCAgCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 135097 | 0.72 | 0.355736 |
Target: 5'- -cGUCGUCGUCGUCcUCGUCcUCGUCg -3' miRNA: 3'- aaCAGCGGCAGCGGcGGCAGcAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 62980 | 0.72 | 0.371373 |
Target: 5'- -cGUCGUCGUUcaucguccgGCgGCCGUCGUCG-Ca -3' miRNA: 3'- aaCAGCGGCAG---------CGgCGGCAGCAGCaG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 55111 | 0.72 | 0.371373 |
Target: 5'- gUUGUCaUUGUCGUCGUCGUCGUUGUg -3' miRNA: 3'- -AACAGcGGCAGCGGCGGCAGCAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 91856 | 0.72 | 0.371373 |
Target: 5'- -cGaCGCCGUCGCCaUCGUUGUUGUUg -3' miRNA: 3'- aaCaGCGGCAGCGGcGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 99525 | 0.73 | 0.325874 |
Target: 5'- gUGUCGUCGUCGUCGUCGguagugguugUGUCGUa -3' miRNA: 3'- aACAGCGGCAGCGGCGGCa---------GCAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 39913 | 0.73 | 0.325874 |
Target: 5'- gUUGUCGUuccauaauagUGUCGCCGCCGUUGcCGcCg -3' miRNA: 3'- -AACAGCG----------GCAGCGGCGGCAGCaGCaG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 53473 | 0.73 | 0.340568 |
Target: 5'- -gGUCGUCGcCGCCGCCGgUGUCaUCg -3' miRNA: 3'- aaCAGCGGCaGCGGCGGCaGCAGcAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 128850 | 0.73 | 0.325874 |
Target: 5'- -cGUCGCCGUUGaCGUuccucuCGUCGUCGUUg -3' miRNA: 3'- aaCAGCGGCAGCgGCG------GCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 1939 | 0.73 | 0.304725 |
Target: 5'- uUUGUUGCUuaUCGCCGCCGauggugUCGUUGUCa -3' miRNA: 3'- -AACAGCGGc-AGCGGCGGC------AGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 3215 | 0.73 | 0.325874 |
Target: 5'- --uUCGUCGUCGUCGUCGUCaUUGUCa -3' miRNA: 3'- aacAGCGGCAGCGGCGGCAGcAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 133162 | 0.74 | 0.284647 |
Target: 5'- gUUGUUGCCGaguaucugCGCCGUCGUCGcCGUg -3' miRNA: 3'- -AACAGCGGCa-------GCGGCGGCAGCaGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 51229 | 0.74 | 0.27185 |
Target: 5'- -aGUCGUCGUCgGCCGUCGUC-UCGUa -3' miRNA: 3'- aaCAGCGGCAG-CGGCGGCAGcAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 102888 | 0.74 | 0.291221 |
Target: 5'- -cGUCGCCGcCGCCGCCGcCGg-GUUu -3' miRNA: 3'- aaCAGCGGCaGCGGCGGCaGCagCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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