miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 117729 0.82 0.080302
Target:  5'- -cGUCGUCGUCGCCGCCGccuucUUGUCGUUu -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGC-----AGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4524 0.82 0.086822
Target:  5'- -cGUCGUuauuagCGUCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- aaCAGCG------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 135371 0.81 0.104045
Target:  5'- uUUGUCGCCGcCGUCGUCGcCGUUGUCa -3'
miRNA:   3'- -AACAGCGGCaGCGGCGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 6829 0.81 0.104045
Target:  5'- -cGUUGUCGUCGUCGUCGUCGUCGg- -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 1487 0.81 0.101401
Target:  5'- -cGcCGCCGcCGCCGCCGUCaUCGUCu -3'
miRNA:   3'- aaCaGCGGCaGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4411 0.81 0.096301
Target:  5'- gUUGUCGuuGUCauuGUCGUCGUCGUCGUCa -3'
miRNA:   3'- -AACAGCggCAG---CGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3857 0.81 0.096301
Target:  5'- aUUGUCGUuaauuuguauaaUGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCG------------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 1838 0.8 0.118266
Target:  5'- cUGgCGCCGUCGCCaCCGaCGUCGUCg -3'
miRNA:   3'- aACaGCGGCAGCGGcGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 33338 0.8 0.124447
Target:  5'- -cGUCGUUaUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGcAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 56306 0.79 0.141229
Target:  5'- gUGUCGUCGUaGUCGUCGUCGUCGUa -3'
miRNA:   3'- aACAGCGGCAgCGGCGGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 49312 0.79 0.144825
Target:  5'- -cGgCGCCaucGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCaGCGG---CAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 32560 0.79 0.137715
Target:  5'- gUUGUUGUCGUuggcuagcacCGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCA----------GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 2396 0.78 0.164089
Target:  5'- --uUCGCUGuacUCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- aacAGCGGC---AGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 17244 0.78 0.156121
Target:  5'- -cGUCGacggCGUUGUCGUCGUCGUCGUCu -3'
miRNA:   3'- aaCAGCg---GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 17741 0.78 0.164089
Target:  5'- uUUG-CGUucuuCGUCGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -AACaGCG----GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 100274 0.78 0.168208
Target:  5'- -cGcCGCCGUCGCCGCCGcagacuaugcauUCGUUGUa -3'
miRNA:   3'- aaCaGCGGCAGCGGCGGC------------AGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 6225 0.77 0.181127
Target:  5'- -aGUCGCCGcCGCCGCCGcCGcCGcCg -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 25515 0.77 0.181127
Target:  5'- cUGUCGUCGUCGUCGUCGUuacCGUUGUUa -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCA---GCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 12227 0.77 0.17242
Target:  5'- -gGUUGCUGUUuugGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGCAG---CGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 125091 0.77 0.17242
Target:  5'- cUGUCGCCGcCGCCGCCGcCGcCGcCc -3'
miRNA:   3'- aACAGCGGCaGCGGCGGCaGCaGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.