miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 25515 0.77 0.181127
Target:  5'- cUGUCGUCGUCGUCGUCGUuacCGUUGUUa -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCA---GCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 123690 0.76 0.214724
Target:  5'- cUGUCGUCGUCGUCGUCGUCuUUGUUc -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 127528 0.76 0.199713
Target:  5'- --uUCGUCGUCGCuagauccgcuuuCGUCGUCGUCGUCg -3'
miRNA:   3'- aacAGCGGCAGCG------------GCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 99817 0.76 0.225261
Target:  5'- --cUCGCUGaugcuaUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aacAGCGGC------AGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 41291 0.75 0.241886
Target:  5'- --uUUGUCGUUGCCGUCGaCGUCGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 107163 0.75 0.241886
Target:  5'- --cUCGUCGaUGCCGCCGUUGUCGUa -3'
miRNA:   3'- aacAGCGGCaGCGGCGGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 1222 0.75 0.24765
Target:  5'- -cGUCGCCGUCGaa-CCGUCGUCGa- -3'
miRNA:   3'- aaCAGCGGCAGCggcGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 133162 0.74 0.284647
Target:  5'- gUUGUUGCCGaguaucugCGCCGUCGUCGcCGUg -3'
miRNA:   3'- -AACAGCGGCa-------GCGGCGGCAGCaGCAg -5'
8530 5' -60.2 NC_002169.1 + 102888 0.74 0.291221
Target:  5'- -cGUCGCCGcCGCCGCCGcCGg-GUUu -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCagCAG- -5'
8530 5' -60.2 NC_002169.1 + 51229 0.74 0.27185
Target:  5'- -aGUCGUCGUCgGCCGUCGUC-UCGUa -3'
miRNA:   3'- aaCAGCGGCAG-CGGCGGCAGcAGCAg -5'
8530 5' -60.2 NC_002169.1 + 99525 0.73 0.325874
Target:  5'- gUGUCGUCGUCGUCGUCGguagugguugUGUCGUa -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCa---------GCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 39913 0.73 0.325874
Target:  5'- gUUGUCGUuccauaauagUGUCGCCGCCGUUGcCGcCg -3'
miRNA:   3'- -AACAGCG----------GCAGCGGCGGCAGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 1939 0.73 0.304725
Target:  5'- uUUGUUGCUuaUCGCCGCCGauggugUCGUUGUCa -3'
miRNA:   3'- -AACAGCGGc-AGCGGCGGC------AGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3215 0.73 0.325874
Target:  5'- --uUCGUCGUCGUCGUCGUCaUUGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 53473 0.73 0.340568
Target:  5'- -gGUCGUCGcCGCCGCCGgUGUCaUCg -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 128850 0.73 0.325874
Target:  5'- -cGUCGCCGUUGaCGUuccucuCGUCGUCGUUg -3'
miRNA:   3'- aaCAGCGGCAGCgGCG------GCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 48140 0.72 0.348093
Target:  5'- ---cCGCCGUCGgCGCCGUCGU-GUg -3'
miRNA:   3'- aacaGCGGCAGCgGCGGCAGCAgCAg -5'
8530 5' -60.2 NC_002169.1 + 55111 0.72 0.371373
Target:  5'- gUUGUCaUUGUCGUCGUCGUCGUUGUg -3'
miRNA:   3'- -AACAGcGGCAGCGGCGGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 135097 0.72 0.355736
Target:  5'- -cGUCGUCGUCGUCcUCGUCcUCGUCg -3'
miRNA:   3'- aaCAGCGGCAGCGGcGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 62980 0.72 0.371373
Target:  5'- -cGUCGUCGUUcaucguccgGCgGCCGUCGUCG-Ca -3'
miRNA:   3'- aaCAGCGGCAG---------CGgCGGCAGCAGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.