miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 91856 0.72 0.371373
Target:  5'- -cGaCGCCGUCGCCaUCGUUGUUGUUg -3'
miRNA:   3'- aaCaGCGGCAGCGGcGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 62143 0.71 0.404023
Target:  5'- gUGUCGCCGUUGaugaUGUCaUUGUCGUCg -3'
miRNA:   3'- aACAGCGGCAGCg---GCGGcAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 14330 0.71 0.421015
Target:  5'- ---aUGCCGgcgaauaUGUCGCCGUUGUCGUCg -3'
miRNA:   3'- aacaGCGGCa------GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 40729 0.71 0.421015
Target:  5'- aUGUCGCCGUCGCCGCaauacUUGUUc -3'
miRNA:   3'- aACAGCGGCAGCGGCGgcagcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 7024 0.7 0.45625
Target:  5'- gUUGUCGUCGUCGCauugGCUG-CGgCGUCa -3'
miRNA:   3'- -AACAGCGGCAGCGg---CGGCaGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 70704 0.7 0.465306
Target:  5'- -cGUCGUCGUCGgCGggcUUGUCGUCGUg -3'
miRNA:   3'- aaCAGCGGCAGCgGC---GGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 53006 0.7 0.474453
Target:  5'- --aUCGUCGUUGUCGuuGUCGUCuUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCggCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 9738 0.7 0.493013
Target:  5'- -cGUCGaCGUCGUCGUCGUCuccauuGUUGUCu -3'
miRNA:   3'- aaCAGCgGCAGCGGCGGCAG------CAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 34435 0.69 0.502417
Target:  5'- aUGUUGuuGUUGuuGUCGUCGUUGg- -3'
miRNA:   3'- aACAGCggCAGCggCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 117692 0.69 0.502417
Target:  5'- aUGcgCGCCGcUC-CCGUCGUCGUCGa- -3'
miRNA:   3'- aACa-GCGGC-AGcGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 128106 0.69 0.502417
Target:  5'- -cGcCGCCGcCGCCGCCGcCGcCGcCu -3'
miRNA:   3'- aaCaGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 39375 0.69 0.511898
Target:  5'- --aUUGCCGaUCGgcaCCGCCGUCGUCaUCg -3'
miRNA:   3'- aacAGCGGC-AGC---GGCGGCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 5555 0.69 0.511898
Target:  5'- --aUUGuuGUUGCUGCCGUCGcCGUa -3'
miRNA:   3'- aacAGCggCAGCGGCGGCAGCaGCAg -5'
8530 5' -60.2 NC_002169.1 + 118934 0.69 0.531076
Target:  5'- -cGgCGgCGUCGUCGuuGUCGUCGg- -3'
miRNA:   3'- aaCaGCgGCAGCGGCggCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 84110 0.69 0.531076
Target:  5'- -aGUCGCUGaUCaCCgauauuagagcGCCGUUGUCGUCa -3'
miRNA:   3'- aaCAGCGGC-AGcGG-----------CGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3551 0.69 0.531076
Target:  5'- --uUCGUCGUCGuuGUCGUCccuGUCGUUu -3'
miRNA:   3'- aacAGCGGCAGCggCGGCAG---CAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 92761 0.68 0.570154
Target:  5'- uUUGUCGUCGUCGCCuCC-UCGcaaaCGUCc -3'
miRNA:   3'- -AACAGCGGCAGCGGcGGcAGCa---GCAG- -5'
8530 5' -60.2 NC_002169.1 + 96156 0.68 0.580042
Target:  5'- --cUCGCCGcacgacaacaugUCGCCGCCGUCGaccaucaCGUUu -3'
miRNA:   3'- aacAGCGGC------------AGCGGCGGCAGCa------GCAG- -5'
8530 5' -60.2 NC_002169.1 + 19605 0.68 0.589966
Target:  5'- -gGUCGuuGUCGUugCGCCGgucCGUCGa- -3'
miRNA:   3'- aaCAGCggCAGCG--GCGGCa--GCAGCag -5'
8530 5' -60.2 NC_002169.1 + 81964 0.68 0.589966
Target:  5'- --cUCGUCGUCGgUGUCGUCGaUGUCg -3'
miRNA:   3'- aacAGCGGCAGCgGCGGCAGCaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.