Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8530 | 5' | -60.2 | NC_002169.1 | + | 1222 | 0.75 | 0.24765 |
Target: 5'- -cGUCGCCGUCGaa-CCGUCGUCGa- -3' miRNA: 3'- aaCAGCGGCAGCggcGGCAGCAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 41291 | 0.75 | 0.241886 |
Target: 5'- --uUUGUCGUUGCCGUCGaCGUCGUCa -3' miRNA: 3'- aacAGCGGCAGCGGCGGCaGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 107163 | 0.75 | 0.241886 |
Target: 5'- --cUCGUCGaUGCCGCCGUUGUCGUa -3' miRNA: 3'- aacAGCGGCaGCGGCGGCAGCAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 99817 | 0.76 | 0.225261 |
Target: 5'- --cUCGCUGaugcuaUCGUCGUCGUCGUCGUCg -3' miRNA: 3'- aacAGCGGC------AGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 123690 | 0.76 | 0.214724 |
Target: 5'- cUGUCGUCGUCGUCGUCGUCuUUGUUc -3' miRNA: 3'- aACAGCGGCAGCGGCGGCAGcAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 127528 | 0.76 | 0.199713 |
Target: 5'- --uUCGUCGUCGCuagauccgcuuuCGUCGUCGUCGUCg -3' miRNA: 3'- aacAGCGGCAGCG------------GCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 75681 | 0.77 | 0.185625 |
Target: 5'- -cGUCGUCGUCGUCGUCGUcuccacCGUUGUCa -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCA------GCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 6225 | 0.77 | 0.181127 |
Target: 5'- -aGUCGCCGcCGCCGCCGcCGcCGcCg -3' miRNA: 3'- aaCAGCGGCaGCGGCGGCaGCaGCaG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 25515 | 0.77 | 0.181127 |
Target: 5'- cUGUCGUCGUCGUCGUCGUuacCGUUGUUa -3' miRNA: 3'- aACAGCGGCAGCGGCGGCA---GCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 125091 | 0.77 | 0.17242 |
Target: 5'- cUGUCGCCGcCGCCGCCGcCGcCGcCc -3' miRNA: 3'- aACAGCGGCaGCGGCGGCaGCaGCaG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 12227 | 0.77 | 0.17242 |
Target: 5'- -gGUUGCUGUUuugGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCAGCGGCAG---CGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 100274 | 0.78 | 0.168208 |
Target: 5'- -cGcCGCCGUCGCCGCCGcagacuaugcauUCGUUGUa -3' miRNA: 3'- aaCaGCGGCAGCGGCGGC------------AGCAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 2396 | 0.78 | 0.164089 |
Target: 5'- --uUCGCUGuacUCGUCGUCGUCGUCGUCa -3' miRNA: 3'- aacAGCGGC---AGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 17741 | 0.78 | 0.164089 |
Target: 5'- uUUG-CGUucuuCGUCGCUGUCGUCGUCGUCg -3' miRNA: 3'- -AACaGCG----GCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 17244 | 0.78 | 0.156121 |
Target: 5'- -cGUCGacggCGUUGUCGUCGUCGUCGUCu -3' miRNA: 3'- aaCAGCg---GCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 49312 | 0.79 | 0.144825 |
Target: 5'- -cGgCGCCaucGUCGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCaGCGG---CAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 56306 | 0.79 | 0.141229 |
Target: 5'- gUGUCGUCGUaGUCGUCGUCGUCGUa -3' miRNA: 3'- aACAGCGGCAgCGGCGGCAGCAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 32560 | 0.79 | 0.137715 |
Target: 5'- gUUGUUGUCGUuggcuagcacCGCUGUCGUCGUCGUCg -3' miRNA: 3'- -AACAGCGGCA----------GCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 33338 | 0.8 | 0.124447 |
Target: 5'- -cGUCGUUaUCGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCAGCGGcAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 1838 | 0.8 | 0.118266 |
Target: 5'- cUGgCGCCGUCGCCaCCGaCGUCGUCg -3' miRNA: 3'- aACaGCGGCAGCGGcGGCaGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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