Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8530 | 5' | -60.2 | NC_002169.1 | + | 86751 | 0.88 | 0.032665 |
Target: 5'- -aGUCGUCGUCGUCGUCGUCGUCGUUg -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 108900 | 0.88 | 0.031803 |
Target: 5'- -cGUCGUCGUUGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 109389 | 0.88 | 0.031803 |
Target: 5'- -cGUCGUCGUUGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 24875 | 0.88 | 0.031803 |
Target: 5'- -cGUCGUCGUCGUCGUCGUCGUCGUUa -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 65448 | 0.89 | 0.027081 |
Target: 5'- -cGcCGCCGUCGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCaGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 33280 | 0.94 | 0.01309 |
Target: 5'- gUUGUCGUCGUCGUCGUCGUCGUCGUCg -3' miRNA: 3'- -AACAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 4276 | 1.07 | 0.001455 |
Target: 5'- gUUGUCGCCGUCGCCGCCGUCGUCGUCg -3' miRNA: 3'- -AACAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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