miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 40729 0.71 0.421015
Target:  5'- aUGUCGCCGUCGCCGCaauacUUGUUc -3'
miRNA:   3'- aACAGCGGCAGCGGCGgcagcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 41291 0.75 0.241886
Target:  5'- --uUUGUCGUUGCCGUCGaCGUCGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 46184 0.66 0.679763
Target:  5'- --cUCGCC-UCGUCGCCGaUCGcauucaccUCGUCg -3'
miRNA:   3'- aacAGCGGcAGCGGCGGC-AGC--------AGCAG- -5'
8530 5' -60.2 NC_002169.1 + 48140 0.72 0.348093
Target:  5'- ---cCGCCGUCGgCGCCGUCGU-GUg -3'
miRNA:   3'- aacaGCGGCAGCgGCGGCAGCAgCAg -5'
8530 5' -60.2 NC_002169.1 + 49312 0.79 0.144825
Target:  5'- -cGgCGCCaucGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCaGCGG---CAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 49431 0.66 0.699507
Target:  5'- aUUGUaaaCGgCGUCGCCGUCGUUGaUGUUu -3'
miRNA:   3'- -AACA---GCgGCAGCGGCGGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 51229 0.74 0.27185
Target:  5'- -aGUCGUCGUCgGCCGUCGUC-UCGUa -3'
miRNA:   3'- aaCAGCGGCAG-CGGCGGCAGcAGCAg -5'
8530 5' -60.2 NC_002169.1 + 51424 0.68 0.599919
Target:  5'- -aGUCGuuGgguagggUGCCGuuGaCGUCGUCg -3'
miRNA:   3'- aaCAGCggCa------GCGGCggCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 53006 0.7 0.474453
Target:  5'- --aUCGUCGUUGUCGuuGUCGUCuUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCggCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 53473 0.73 0.340568
Target:  5'- -gGUCGUCGcCGCCGCCGgUGUCaUCg -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 55111 0.72 0.371373
Target:  5'- gUUGUCaUUGUCGUCGUCGUCGUUGUg -3'
miRNA:   3'- -AACAGcGGCAGCGGCGGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 55494 0.85 0.052738
Target:  5'- aUGcCGCCGcCGCUGUCGUCGUCGUCa -3'
miRNA:   3'- aACaGCGGCaGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 56306 0.79 0.141229
Target:  5'- gUGUCGUCGUaGUCGUCGUCGUCGUa -3'
miRNA:   3'- aACAGCGGCAgCGGCGGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 56804 0.68 0.589966
Target:  5'- --aUUGUCGUCGCCGUCGUUacgUGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGca-GCAG- -5'
8530 5' -60.2 NC_002169.1 + 59663 0.66 0.689658
Target:  5'- -aGUCGCCGUCGaaGCCaUCcUCGa- -3'
miRNA:   3'- aaCAGCGGCAGCggCGGcAGcAGCag -5'
8530 5' -60.2 NC_002169.1 + 61587 0.84 0.063437
Target:  5'- -cGUCGUaauCGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCG---GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 62065 0.66 0.728697
Target:  5'- -aGUCGaCGaaaagaCGCCGCCGUCGauUCGgUCa -3'
miRNA:   3'- aaCAGCgGCa-----GCGGCGGCAGC--AGC-AG- -5'
8530 5' -60.2 NC_002169.1 + 62143 0.71 0.404023
Target:  5'- gUGUCGCCGUUGaugaUGUCaUUGUCGUCg -3'
miRNA:   3'- aACAGCGGCAGCg---GCGGcAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 62980 0.72 0.371373
Target:  5'- -cGUCGUCGUUcaucguccgGCgGCCGUCGUCG-Ca -3'
miRNA:   3'- aaCAGCGGCAG---------CGgCGGCAGCAGCaG- -5'
8530 5' -60.2 NC_002169.1 + 65448 0.89 0.027081
Target:  5'- -cGcCGCCGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCaGCGGCAGCGGCGGCAGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.