miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 69343 0.67 0.639889
Target:  5'- -cGUaGCCGUCGCUGgCGUUG-CGUUu -3'
miRNA:   3'- aaCAgCGGCAGCGGCgGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 70704 0.7 0.465306
Target:  5'- -cGUCGUCGUCGgCGggcUUGUCGUCGUg -3'
miRNA:   3'- aaCAGCGGCAGCgGC---GGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 74738 0.83 0.068639
Target:  5'- -cGUCGUCGUCuCCGCCGUCGUCGcCa -3'
miRNA:   3'- aaCAGCGGCAGcGGCGGCAGCAGCaG- -5'
8530 5' -60.2 NC_002169.1 + 75681 0.77 0.185625
Target:  5'- -cGUCGUCGUCGUCGUCGUcuccacCGUUGUCa -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCA------GCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 75704 0.66 0.728697
Target:  5'- --aUCGCCGUCaCCaUCGaCGUCGUCu -3'
miRNA:   3'- aacAGCGGCAGcGGcGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 77908 0.66 0.699507
Target:  5'- gUGcCGCgCGUCGCCGaCGaCG-CGUCg -3'
miRNA:   3'- aACaGCG-GCAGCGGCgGCaGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 78129 0.68 0.589966
Target:  5'- ---cCGCCGa-GCCGCCGUCGguccgCGUa -3'
miRNA:   3'- aacaGCGGCagCGGCGGCAGCa----GCAg -5'
8530 5' -60.2 NC_002169.1 + 78907 0.85 0.05136
Target:  5'- --aUCGUCGUCGUCGUCGUCGUCGUCu -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 81964 0.68 0.589966
Target:  5'- --cUCGUCGUCGgUGUCGUCGaUGUCg -3'
miRNA:   3'- aacAGCGGCAGCgGCGGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 84110 0.69 0.531076
Target:  5'- -aGUCGCUGaUCaCCgauauuagagcGCCGUUGUCGUCa -3'
miRNA:   3'- aaCAGCGGC-AGcGG-----------CGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 84697 0.66 0.695573
Target:  5'- aUGUCGCCaaacccucuacuuUCGCCGCCcG-CGUCGa- -3'
miRNA:   3'- aACAGCGGc------------AGCGGCGG-CaGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 86324 0.82 0.091445
Target:  5'- aUGUCGUuauugguauUGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aACAGCG---------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 86751 0.88 0.032665
Target:  5'- -aGUCGUCGUCGUCGUCGUCGUCGUUg -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 91856 0.72 0.371373
Target:  5'- -cGaCGCCGUCGCCaUCGUUGUUGUUg -3'
miRNA:   3'- aaCaGCGGCAGCGGcGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 92761 0.68 0.570154
Target:  5'- uUUGUCGUCGUCGCCuCC-UCGcaaaCGUCc -3'
miRNA:   3'- -AACAGCGGCAGCGGcGGcAGCa---GCAG- -5'
8530 5' -60.2 NC_002169.1 + 96156 0.68 0.580042
Target:  5'- --cUCGCCGcacgacaacaugUCGCCGCCGUCGaccaucaCGUUu -3'
miRNA:   3'- aacAGCGGC------------AGCGGCGGCAGCa------GCAG- -5'
8530 5' -60.2 NC_002169.1 + 99525 0.73 0.325874
Target:  5'- gUGUCGUCGUCGUCGUCGguagugguugUGUCGUa -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCa---------GCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 99817 0.76 0.225261
Target:  5'- --cUCGCUGaugcuaUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aacAGCGGC------AGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 100274 0.78 0.168208
Target:  5'- -cGcCGCCGUCGCCGCCGcagacuaugcauUCGUUGUa -3'
miRNA:   3'- aaCaGCGGCAGCGGCGGC------------AGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 101359 0.84 0.065127
Target:  5'- aUUGUUGuuGUUGUCGUCGUCGUCGUCa -3'
miRNA:   3'- -AACAGCggCAGCGGCGGCAGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.