Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8530 | 5' | -60.2 | NC_002169.1 | + | 102888 | 0.74 | 0.291221 |
Target: 5'- -cGUCGCCGcCGCCGCCGcCGg-GUUu -3' miRNA: 3'- aaCAGCGGCaGCGGCGGCaGCagCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 103846 | 0.67 | 0.619887 |
Target: 5'- gUGUCGUCuUCGUCGUCGUCGUa--- -3' miRNA: 3'- aACAGCGGcAGCGGCGGCAGCAgcag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 107163 | 0.75 | 0.241886 |
Target: 5'- --cUCGUCGaUGCCGCCGUUGUCGUa -3' miRNA: 3'- aacAGCGGCaGCGGCGGCAGCAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 108038 | 0.67 | 0.638889 |
Target: 5'- -cGUCGUC-UCGCCcaccaccaccaccGCCGUCGUC-UCg -3' miRNA: 3'- aaCAGCGGcAGCGG-------------CGGCAGCAGcAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 108900 | 0.88 | 0.031803 |
Target: 5'- -cGUCGUCGUUGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 109389 | 0.88 | 0.031803 |
Target: 5'- -cGUCGUCGUUGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 111877 | 0.66 | 0.679763 |
Target: 5'- gUGUUGuuGUCGCCGaacaCGUCaaUGUCc -3' miRNA: 3'- aACAGCggCAGCGGCg---GCAGcaGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 112781 | 0.66 | 0.689658 |
Target: 5'- aUGUCGgCGUCGUCGuaGUCGguUCGa- -3' miRNA: 3'- aACAGCgGCAGCGGCggCAGC--AGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 117692 | 0.69 | 0.502417 |
Target: 5'- aUGcgCGCCGcUC-CCGUCGUCGUCGa- -3' miRNA: 3'- aACa-GCGGC-AGcGGCGGCAGCAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 117729 | 0.82 | 0.080302 |
Target: 5'- -cGUCGUCGUCGCCGCCGccuucUUGUCGUUu -3' miRNA: 3'- aaCAGCGGCAGCGGCGGC-----AGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 118662 | 0.83 | 0.078234 |
Target: 5'- -cGUCGUCGUCGUCGUCGUCGuaUCGUCu -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCAGC--AGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 118934 | 0.69 | 0.531076 |
Target: 5'- -cGgCGgCGUCGUCGuuGUCGUCGg- -3' miRNA: 3'- aaCaGCgGCAGCGGCggCAGCAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 120977 | 0.84 | 0.066861 |
Target: 5'- --aUCGUCGUCGCCGUCGUCGUUGUUg -3' miRNA: 3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 122159 | 0.66 | 0.699507 |
Target: 5'- -cGUCGUCGUugaCGCUauuGCCGUCGcCGcCa -3' miRNA: 3'- aaCAGCGGCA---GCGG---CGGCAGCaGCaG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 123690 | 0.76 | 0.214724 |
Target: 5'- cUGUCGUCGUCGUCGUCGUCuUUGUUc -3' miRNA: 3'- aACAGCGGCAGCGGCGGCAGcAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 124046 | 0.83 | 0.078234 |
Target: 5'- --aUCGUCGUCGUCGUCGUCGUCGUUa -3' miRNA: 3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 125091 | 0.77 | 0.17242 |
Target: 5'- cUGUCGCCGcCGCCGCCGcCGcCGcCc -3' miRNA: 3'- aACAGCGGCaGCGGCGGCaGCaGCaG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 125579 | 0.66 | 0.689658 |
Target: 5'- --uUCGCgCGUCGCCGCCacUCgGUCGa- -3' miRNA: 3'- aacAGCG-GCAGCGGCGGc-AG-CAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 127241 | 0.67 | 0.659869 |
Target: 5'- aUGUgGCUGguaaagaUGCCGCUGUUGUCGa- -3' miRNA: 3'- aACAgCGGCa------GCGGCGGCAGCAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 127528 | 0.76 | 0.199713 |
Target: 5'- --uUCGUCGUCGCuagauccgcuuuCGUCGUCGUCGUCg -3' miRNA: 3'- aacAGCGGCAGCG------------GCGGCAGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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