Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 128106 | 0.69 | 0.502417 |
|
Target: 5'- -cGcCGCCGcCGCCGCCGcCGcCGcCu -3' miRNA: 3'- aaCaGCGGCaGCGGCGGCaGCaGCaG- -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 128850 | 0.73 | 0.325874 |
|
Target: 5'- -cGUCGCCGUUGaCGUuccucuCGUCGUCGUUg -3' miRNA: 3'- aaCAGCGGCAGCgGCG------GCAGCAGCAG- -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 132678 | 0.67 | 0.639889 |
|
Target: 5'- ---aCGCaaacaaCGUUGUCGUCGUCGUCGUUc -3' miRNA: 3'- aacaGCG------GCAGCGGCGGCAGCAGCAG- -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 133162 | 0.74 | 0.284647 |
|
Target: 5'- gUUGUUGCCGaguaucugCGCCGUCGUCGcCGUg -3' miRNA: 3'- -AACAGCGGCa-------GCGGCGGCAGCaGCAg -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 135097 | 0.72 | 0.355736 |
|
Target: 5'- -cGUCGUCGUCGUCcUCGUCcUCGUCg -3' miRNA: 3'- aaCAGCGGCAGCGGcGGCAGcAGCAG- -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 135172 | 0.67 | 0.629887 |
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Target: 5'- --aUCGUCGUUGU--UCGUCGUCGUCa -3' miRNA: 3'- aacAGCGGCAGCGgcGGCAGCAGCAG- -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 135371 | 0.81 | 0.104045 |
|
Target: 5'- uUUGUCGCCGcCGUCGUCGcCGUUGUCa -3' miRNA: 3'- -AACAGCGGCaGCGGCGGCaGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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