miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 111877 0.66 0.679763
Target:  5'- gUGUUGuuGUCGCCGaacaCGUCaaUGUCc -3'
miRNA:   3'- aACAGCggCAGCGGCg---GCAGcaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 109389 0.88 0.031803
Target:  5'- -cGUCGUCGUUGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 108900 0.88 0.031803
Target:  5'- -cGUCGUCGUUGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 108038 0.67 0.638889
Target:  5'- -cGUCGUC-UCGCCcaccaccaccaccGCCGUCGUC-UCg -3'
miRNA:   3'- aaCAGCGGcAGCGG-------------CGGCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 107163 0.75 0.241886
Target:  5'- --cUCGUCGaUGCCGCCGUUGUCGUa -3'
miRNA:   3'- aacAGCGGCaGCGGCGGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 103846 0.67 0.619887
Target:  5'- gUGUCGUCuUCGUCGUCGUCGUa--- -3'
miRNA:   3'- aACAGCGGcAGCGGCGGCAGCAgcag -5'
8530 5' -60.2 NC_002169.1 + 102888 0.74 0.291221
Target:  5'- -cGUCGCCGcCGCCGCCGcCGg-GUUu -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCagCAG- -5'
8530 5' -60.2 NC_002169.1 + 101359 0.84 0.065127
Target:  5'- aUUGUUGuuGUUGUCGUCGUCGUCGUCa -3'
miRNA:   3'- -AACAGCggCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 100274 0.78 0.168208
Target:  5'- -cGcCGCCGUCGCCGCCGcagacuaugcauUCGUUGUa -3'
miRNA:   3'- aaCaGCGGCAGCGGCGGC------------AGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 99817 0.76 0.225261
Target:  5'- --cUCGCUGaugcuaUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aacAGCGGC------AGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 99525 0.73 0.325874
Target:  5'- gUGUCGUCGUCGUCGUCGguagugguugUGUCGUa -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCa---------GCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 96156 0.68 0.580042
Target:  5'- --cUCGCCGcacgacaacaugUCGCCGCCGUCGaccaucaCGUUu -3'
miRNA:   3'- aacAGCGGC------------AGCGGCGGCAGCa------GCAG- -5'
8530 5' -60.2 NC_002169.1 + 92761 0.68 0.570154
Target:  5'- uUUGUCGUCGUCGCCuCC-UCGcaaaCGUCc -3'
miRNA:   3'- -AACAGCGGCAGCGGcGGcAGCa---GCAG- -5'
8530 5' -60.2 NC_002169.1 + 91856 0.72 0.371373
Target:  5'- -cGaCGCCGUCGCCaUCGUUGUUGUUg -3'
miRNA:   3'- aaCaGCGGCAGCGGcGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 86751 0.88 0.032665
Target:  5'- -aGUCGUCGUCGUCGUCGUCGUCGUUg -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 86324 0.82 0.091445
Target:  5'- aUGUCGUuauugguauUGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aACAGCG---------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 84697 0.66 0.695573
Target:  5'- aUGUCGCCaaacccucuacuuUCGCCGCCcG-CGUCGa- -3'
miRNA:   3'- aACAGCGGc------------AGCGGCGG-CaGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 84110 0.69 0.531076
Target:  5'- -aGUCGCUGaUCaCCgauauuagagcGCCGUUGUCGUCa -3'
miRNA:   3'- aaCAGCGGC-AGcGG-----------CGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 81964 0.68 0.589966
Target:  5'- --cUCGUCGUCGgUGUCGUCGaUGUCg -3'
miRNA:   3'- aacAGCGGCAGCgGCGGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 78907 0.85 0.05136
Target:  5'- --aUCGUCGUCGUCGUCGUCGUCGUCu -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.