Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8530 | 5' | -60.2 | NC_002169.1 | + | 51229 | 0.74 | 0.27185 |
Target: 5'- -aGUCGUCGUCgGCCGUCGUC-UCGUa -3' miRNA: 3'- aaCAGCGGCAG-CGGCGGCAGcAGCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 49431 | 0.66 | 0.699507 |
Target: 5'- aUUGUaaaCGgCGUCGCCGUCGUUGaUGUUu -3' miRNA: 3'- -AACA---GCgGCAGCGGCGGCAGCaGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 49312 | 0.79 | 0.144825 |
Target: 5'- -cGgCGCCaucGUCGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCaGCGG---CAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 48140 | 0.72 | 0.348093 |
Target: 5'- ---cCGCCGUCGgCGCCGUCGU-GUg -3' miRNA: 3'- aacaGCGGCAGCgGCGGCAGCAgCAg -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 46184 | 0.66 | 0.679763 |
Target: 5'- --cUCGCC-UCGUCGCCGaUCGcauucaccUCGUCg -3' miRNA: 3'- aacAGCGGcAGCGGCGGC-AGC--------AGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 41291 | 0.75 | 0.241886 |
Target: 5'- --uUUGUCGUUGCCGUCGaCGUCGUCa -3' miRNA: 3'- aacAGCGGCAGCGGCGGCaGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 40729 | 0.71 | 0.421015 |
Target: 5'- aUGUCGCCGUCGCCGCaauacUUGUUc -3' miRNA: 3'- aACAGCGGCAGCGGCGgcagcAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 39913 | 0.73 | 0.325874 |
Target: 5'- gUUGUCGUuccauaauagUGUCGCCGCCGUUGcCGcCg -3' miRNA: 3'- -AACAGCG----------GCAGCGGCGGCAGCaGCaG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 39375 | 0.69 | 0.511898 |
Target: 5'- --aUUGCCGaUCGgcaCCGCCGUCGUCaUCg -3' miRNA: 3'- aacAGCGGC-AGC---GGCGGCAGCAGcAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 37406 | 0.67 | 0.673807 |
Target: 5'- -cGUCgGCCGaUCGCUGuacacuccgaacagaCCGUCGUCGa- -3' miRNA: 3'- aaCAG-CGGC-AGCGGC---------------GGCAGCAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 34435 | 0.69 | 0.502417 |
Target: 5'- aUGUUGuuGUUGuuGUCGUCGUUGg- -3' miRNA: 3'- aACAGCggCAGCggCGGCAGCAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 33338 | 0.8 | 0.124447 |
Target: 5'- -cGUCGUUaUCGUCGUCGUCGUCGUCg -3' miRNA: 3'- aaCAGCGGcAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 33280 | 0.94 | 0.01309 |
Target: 5'- gUUGUCGUCGUCGUCGUCGUCGUCGUCg -3' miRNA: 3'- -AACAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 32560 | 0.79 | 0.137715 |
Target: 5'- gUUGUUGUCGUuggcuagcacCGCUGUCGUCGUCGUCg -3' miRNA: 3'- -AACAGCGGCA----------GCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 26367 | 0.68 | 0.599919 |
Target: 5'- aUUGUaaaaGCCuUCGCCGgCGaCGUCGUUg -3' miRNA: 3'- -AACAg---CGGcAGCGGCgGCaGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 25515 | 0.77 | 0.181127 |
Target: 5'- cUGUCGUCGUCGUCGUCGUuacCGUUGUUa -3' miRNA: 3'- aACAGCGGCAGCGGCGGCA---GCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 24875 | 0.88 | 0.031803 |
Target: 5'- -cGUCGUCGUCGUCGUCGUCGUCGUUa -3' miRNA: 3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 19605 | 0.68 | 0.589966 |
Target: 5'- -gGUCGuuGUCGUugCGCCGgucCGUCGa- -3' miRNA: 3'- aaCAGCggCAGCG--GCGGCa--GCAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 17741 | 0.78 | 0.164089 |
Target: 5'- uUUG-CGUucuuCGUCGCUGUCGUCGUCGUCg -3' miRNA: 3'- -AACaGCG----GCAGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 17244 | 0.78 | 0.156121 |
Target: 5'- -cGUCGacggCGUUGUCGUCGUCGUCGUCu -3' miRNA: 3'- aaCAGCg---GCAGCGGCGGCAGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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