miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 16184 0.67 0.649886
Target:  5'- aUUGUUGuuGUUGuuGuuGUUGUUGUUg -3'
miRNA:   3'- -AACAGCggCAGCggCggCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 15825 0.68 0.599919
Target:  5'- -cGUCGUCGUgacCGCCGCCGaCGcugccgcaaugCGUCa -3'
miRNA:   3'- aaCAGCGGCA---GCGGCGGCaGCa----------GCAG- -5'
8530 5' -60.2 NC_002169.1 + 15163 0.85 0.05709
Target:  5'- uUUGcCGCCGccacCGCCGCCGUCGUUGUCg -3'
miRNA:   3'- -AACaGCGGCa---GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 14330 0.71 0.421015
Target:  5'- ---aUGCCGgcgaauaUGUCGCCGUUGUCGUCg -3'
miRNA:   3'- aacaGCGGCa------GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 12227 0.77 0.17242
Target:  5'- -gGUUGCUGUUuugGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGCAG---CGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 11898 0.84 0.058617
Target:  5'- --uUCGUCGUCGUCGUCGUCGUCGUCc -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 9738 0.7 0.493013
Target:  5'- -cGUCGaCGUCGUCGUCGUCuccauuGUUGUCu -3'
miRNA:   3'- aaCAGCgGCAGCGGCGGCAG------CAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 9237 0.68 0.61389
Target:  5'- aUUGUCGUCGUCGUCGUUgugacuuguuuguugGUCGaCGUUg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGG---------------CAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 7024 0.7 0.45625
Target:  5'- gUUGUCGUCGUCGCauugGCUG-CGgCGUCa -3'
miRNA:   3'- -AACAGCGGCAGCGg---CGGCaGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 6829 0.81 0.104045
Target:  5'- -cGUUGUCGUCGUCGUCGUCGUCGg- -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 6225 0.77 0.181127
Target:  5'- -aGUCGCCGcCGCCGCCGcCGcCGcCg -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 5555 0.69 0.511898
Target:  5'- --aUUGuuGUUGCUGCCGUCGcCGUa -3'
miRNA:   3'- aacAGCggCAGCGGCGGCAGCaGCAg -5'
8530 5' -60.2 NC_002169.1 + 4524 0.82 0.086822
Target:  5'- -cGUCGUuauuagCGUCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- aaCAGCG------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4411 0.81 0.096301
Target:  5'- gUUGUCGuuGUCauuGUCGUCGUCGUCGUCa -3'
miRNA:   3'- -AACAGCggCAG---CGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4345 0.67 0.658871
Target:  5'- --uUCGCCucCGCCGCCGUCaccaccgcaaccgGUCGUa -3'
miRNA:   3'- aacAGCGGcaGCGGCGGCAG-------------CAGCAg -5'
8530 5' -60.2 NC_002169.1 + 4276 1.07 0.001455
Target:  5'- gUUGUCGCCGUCGCCGCCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3857 0.81 0.096301
Target:  5'- aUUGUCGUuaauuuguauaaUGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCG------------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3551 0.69 0.531076
Target:  5'- --uUCGUCGUCGuuGUCGUCccuGUCGUUu -3'
miRNA:   3'- aacAGCGGCAGCggCGGCAG---CAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3359 0.84 0.058617
Target:  5'- aUUGUCGUCGUCGUCGUCGUCcUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3215 0.73 0.325874
Target:  5'- --uUCGUCGUCGUCGUCGUCaUUGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGcAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.