Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8530 | 5' | -60.2 | NC_002169.1 | + | 2396 | 0.78 | 0.164089 |
Target: 5'- --uUCGCUGuacUCGUCGUCGUCGUCGUCa -3' miRNA: 3'- aacAGCGGC---AGCGGCGGCAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 1939 | 0.73 | 0.304725 |
Target: 5'- uUUGUUGCUuaUCGCCGCCGauggugUCGUUGUCa -3' miRNA: 3'- -AACAGCGGc-AGCGGCGGC------AGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 1838 | 0.8 | 0.118266 |
Target: 5'- cUGgCGCCGUCGCCaCCGaCGUCGUCg -3' miRNA: 3'- aACaGCGGCAGCGGcGGCaGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 1487 | 0.81 | 0.101401 |
Target: 5'- -cGcCGCCGcCGCCGCCGUCaUCGUCu -3' miRNA: 3'- aaCaGCGGCaGCGGCGGCAGcAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 1452 | 0.82 | 0.091445 |
Target: 5'- ---cCGCCGUCGCUGCCacuuucGUCGUCGUCg -3' miRNA: 3'- aacaGCGGCAGCGGCGG------CAGCAGCAG- -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 1222 | 0.75 | 0.24765 |
Target: 5'- -cGUCGCCGUCGaa-CCGUCGUCGa- -3' miRNA: 3'- aaCAGCGGCAGCggcGGCAGCAGCag -5' |
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8530 | 5' | -60.2 | NC_002169.1 | + | 1137 | 0.67 | 0.649886 |
Target: 5'- cUGcCGCCGUCGCCGgUCGUuuagcuugaUGUUGUa -3' miRNA: 3'- aACaGCGGCAGCGGC-GGCA---------GCAGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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