Results 101 - 107 of 107 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 128106 | 0.69 | 0.502417 |
|
Target: 5'- -cGcCGCCGcCGCCGCCGcCGcCGcCu -3' miRNA: 3'- aaCaGCGGCaGCGGCGGCaGCaGCaG- -5' |
|||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 118934 | 0.69 | 0.531076 |
|
Target: 5'- -cGgCGgCGUCGUCGuuGUCGUCGg- -3' miRNA: 3'- aaCaGCgGCAGCGGCggCAGCAGCag -5' |
|||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 96156 | 0.68 | 0.580042 |
|
Target: 5'- --cUCGCCGcacgacaacaugUCGCCGCCGUCGaccaucaCGUUu -3' miRNA: 3'- aacAGCGGC------------AGCGGCGGCAGCa------GCAG- -5' |
|||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 81964 | 0.68 | 0.589966 |
|
Target: 5'- --cUCGUCGUCGgUGUCGUCGaUGUCg -3' miRNA: 3'- aacAGCGGCAGCgGCGGCAGCaGCAG- -5' |
|||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 78129 | 0.68 | 0.589966 |
|
Target: 5'- ---cCGCCGa-GCCGCCGUCGguccgCGUa -3' miRNA: 3'- aacaGCGGCagCGGCGGCAGCa----GCAg -5' |
|||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 56804 | 0.68 | 0.589966 |
|
Target: 5'- --aUUGUCGUCGCCGUCGUUacgUGUCa -3' miRNA: 3'- aacAGCGGCAGCGGCGGCAGca-GCAG- -5' |
|||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 49431 | 0.66 | 0.699507 |
|
Target: 5'- aUUGUaaaCGgCGUCGCCGUCGUUGaUGUUu -3' miRNA: 3'- -AACA---GCgGCAGCGGCGGCAGCaGCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home