miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 53006 0.7 0.474453
Target:  5'- --aUCGUCGUUGUCGuuGUCGUCuUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCggCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 118934 0.69 0.531076
Target:  5'- -cGgCGgCGUCGUCGuuGUCGUCGg- -3'
miRNA:   3'- aaCaGCgGCAGCGGCggCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 69343 0.67 0.639889
Target:  5'- -cGUaGCCGUCGCUGgCGUUG-CGUUu -3'
miRNA:   3'- aaCAgCGGCAGCGGCgGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 84697 0.66 0.695573
Target:  5'- aUGUCGCCaaacccucuacuuUCGCCGCCcG-CGUCGa- -3'
miRNA:   3'- aACAGCGGc------------AGCGGCGG-CaGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 75681 0.77 0.185625
Target:  5'- -cGUCGUCGUCGUCGUCGUcuccacCGUUGUCa -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCA------GCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 55111 0.72 0.371373
Target:  5'- gUUGUCaUUGUCGUCGUCGUCGUUGUg -3'
miRNA:   3'- -AACAGcGGCAGCGGCGGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 81964 0.68 0.589966
Target:  5'- --cUCGUCGUCGgUGUCGUCGaUGUCg -3'
miRNA:   3'- aacAGCGGCAGCgGCGGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 122159 0.66 0.699507
Target:  5'- -cGUCGUCGUugaCGCUauuGCCGUCGcCGcCa -3'
miRNA:   3'- aaCAGCGGCA---GCGG---CGGCAGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 91856 0.72 0.371373
Target:  5'- -cGaCGCCGUCGCCaUCGUUGUUGUUg -3'
miRNA:   3'- aaCaGCGGCAGCGGcGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 77908 0.66 0.699507
Target:  5'- gUGcCGCgCGUCGCCGaCGaCG-CGUCg -3'
miRNA:   3'- aACaGCG-GCAGCGGCgGCaGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 96156 0.68 0.580042
Target:  5'- --cUCGCCGcacgacaacaugUCGCCGCCGUCGaccaucaCGUUu -3'
miRNA:   3'- aacAGCGGC------------AGCGGCGGCAGCa------GCAG- -5'
8530 5' -60.2 NC_002169.1 + 7024 0.7 0.45625
Target:  5'- gUUGUCGUCGUCGCauugGCUG-CGgCGUCa -3'
miRNA:   3'- -AACAGCGGCAGCGg---CGGCaGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 26367 0.68 0.599919
Target:  5'- aUUGUaaaaGCCuUCGCCGgCGaCGUCGUUg -3'
miRNA:   3'- -AACAg---CGGcAGCGGCgGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 108038 0.67 0.638889
Target:  5'- -cGUCGUC-UCGCCcaccaccaccaccGCCGUCGUC-UCg -3'
miRNA:   3'- aaCAGCGGcAGCGG-------------CGGCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 37406 0.67 0.673807
Target:  5'- -cGUCgGCCGaUCGCUGuacacuccgaacagaCCGUCGUCGa- -3'
miRNA:   3'- aaCAG-CGGC-AGCGGC---------------GGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 59663 0.66 0.689658
Target:  5'- -aGUCGCCGUCGaaGCCaUCcUCGa- -3'
miRNA:   3'- aaCAGCGGCAGCggCGGcAGcAGCag -5'
8530 5' -60.2 NC_002169.1 + 49312 0.79 0.144825
Target:  5'- -cGgCGCCaucGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCaGCGG---CAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 125091 0.77 0.17242
Target:  5'- cUGUCGCCGcCGCCGCCGcCGcCGcCc -3'
miRNA:   3'- aACAGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 1222 0.75 0.24765
Target:  5'- -cGUCGCCGUCGaa-CCGUCGUCGa- -3'
miRNA:   3'- aaCAGCGGCAGCggcGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 99525 0.73 0.325874
Target:  5'- gUGUCGUCGUCGUCGUCGguagugguugUGUCGUa -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCa---------GCAGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.