miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 32560 0.79 0.137715
Target:  5'- gUUGUUGUCGUuggcuagcacCGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCA----------GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 62980 0.72 0.371373
Target:  5'- -cGUCGUCGUUcaucguccgGCgGCCGUCGUCG-Ca -3'
miRNA:   3'- aaCAGCGGCAG---------CGgCGGCAGCAGCaG- -5'
8530 5' -60.2 NC_002169.1 + 74738 0.83 0.068639
Target:  5'- -cGUCGUCGUCuCCGCCGUCGUCGcCa -3'
miRNA:   3'- aaCAGCGGCAGcGGCGGCAGCAGCaG- -5'
8530 5' -60.2 NC_002169.1 + 51229 0.74 0.27185
Target:  5'- -aGUCGUCGUCgGCCGUCGUC-UCGUa -3'
miRNA:   3'- aaCAGCGGCAG-CGGCGGCAGcAGCAg -5'
8530 5' -60.2 NC_002169.1 + 15163 0.85 0.05709
Target:  5'- uUUGcCGCCGccacCGCCGCCGUCGUUGUCg -3'
miRNA:   3'- -AACaGCGGCa---GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 100274 0.78 0.168208
Target:  5'- -cGcCGCCGUCGCCGCCGcagacuaugcauUCGUUGUa -3'
miRNA:   3'- aaCaGCGGCAGCGGCGGC------------AGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 1137 0.67 0.649886
Target:  5'- cUGcCGCCGUCGCCGgUCGUuuagcuugaUGUUGUa -3'
miRNA:   3'- aACaGCGGCAGCGGC-GGCA---------GCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 135097 0.72 0.355736
Target:  5'- -cGUCGUCGUCGUCcUCGUCcUCGUCg -3'
miRNA:   3'- aaCAGCGGCAGCGGcGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 48140 0.72 0.348093
Target:  5'- ---cCGCCGUCGgCGCCGUCGU-GUg -3'
miRNA:   3'- aacaGCGGCAGCgGCGGCAGCAgCAg -5'
8530 5' -60.2 NC_002169.1 + 40729 0.71 0.421015
Target:  5'- aUGUCGCCGUCGCCGCaauacUUGUUc -3'
miRNA:   3'- aACAGCGGCAGCGGCGgcagcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 128850 0.73 0.325874
Target:  5'- -cGUCGCCGUUGaCGUuccucuCGUCGUCGUUg -3'
miRNA:   3'- aaCAGCGGCAGCgGCG------GCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3215 0.73 0.325874
Target:  5'- --uUCGUCGUCGUCGUCGUCaUUGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 1939 0.73 0.304725
Target:  5'- uUUGUUGCUuaUCGCCGCCGauggugUCGUUGUCa -3'
miRNA:   3'- -AACAGCGGc-AGCGGCGGC------AGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 133162 0.74 0.284647
Target:  5'- gUUGUUGCCGaguaucugCGCCGUCGUCGcCGUg -3'
miRNA:   3'- -AACAGCGGCa-------GCGGCGGCAGCaGCAg -5'
8530 5' -60.2 NC_002169.1 + 75704 0.66 0.728697
Target:  5'- --aUCGCCGUCaCCaUCGaCGUCGUCu -3'
miRNA:   3'- aacAGCGGCAGcGGcGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 62065 0.66 0.728697
Target:  5'- -aGUCGaCGaaaagaCGCCGCCGUCGauUCGgUCa -3'
miRNA:   3'- aaCAGCgGCa-----GCGGCGGCAGC--AGC-AG- -5'
8530 5' -60.2 NC_002169.1 + 125579 0.66 0.689658
Target:  5'- --uUCGCgCGUCGCCGCCacUCgGUCGa- -3'
miRNA:   3'- aacAGCG-GCAGCGGCGGc-AG-CAGCag -5'
8530 5' -60.2 NC_002169.1 + 112781 0.66 0.689658
Target:  5'- aUGUCGgCGUCGUCGuaGUCGguUCGa- -3'
miRNA:   3'- aACAGCgGCAGCGGCggCAGC--AGCag -5'
8530 5' -60.2 NC_002169.1 + 127241 0.67 0.659869
Target:  5'- aUGUgGCUGguaaagaUGCCGCUGUUGUCGa- -3'
miRNA:   3'- aACAgCGGCa------GCGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 53473 0.73 0.340568
Target:  5'- -gGUCGUCGcCGCCGCCGgUGUCaUCg -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.