miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 135172 0.67 0.629887
Target:  5'- --aUCGUCGUUGU--UCGUCGUCGUCa -3'
miRNA:   3'- aacAGCGGCAGCGgcGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 132678 0.67 0.639889
Target:  5'- ---aCGCaaacaaCGUUGUCGUCGUCGUCGUUc -3'
miRNA:   3'- aacaGCG------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 1137 0.67 0.649886
Target:  5'- cUGcCGCCGUCGCCGgUCGUuuagcuugaUGUUGUa -3'
miRNA:   3'- aACaGCGGCAGCGGC-GGCA---------GCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 127241 0.67 0.659869
Target:  5'- aUGUgGCUGguaaagaUGCCGCUGUUGUCGa- -3'
miRNA:   3'- aACAgCGGCa------GCGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 112781 0.66 0.689658
Target:  5'- aUGUCGgCGUCGUCGuaGUCGguUCGa- -3'
miRNA:   3'- aACAGCgGCAGCGGCggCAGC--AGCag -5'
8530 5' -60.2 NC_002169.1 + 125579 0.66 0.689658
Target:  5'- --uUCGCgCGUCGCCGCCacUCgGUCGa- -3'
miRNA:   3'- aacAGCG-GCAGCGGCGGc-AG-CAGCag -5'
8530 5' -60.2 NC_002169.1 + 62065 0.66 0.728697
Target:  5'- -aGUCGaCGaaaagaCGCCGCCGUCGauUCGgUCa -3'
miRNA:   3'- aaCAGCgGCa-----GCGGCGGCAGC--AGC-AG- -5'
8530 5' -60.2 NC_002169.1 + 3551 0.69 0.531076
Target:  5'- --uUCGUCGUCGuuGUCGUCccuGUCGUUu -3'
miRNA:   3'- aacAGCGGCAGCggCGGCAG---CAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 92761 0.68 0.570154
Target:  5'- uUUGUCGUCGUCGCCuCC-UCGcaaaCGUCc -3'
miRNA:   3'- -AACAGCGGCAGCGGcGGcAGCa---GCAG- -5'
8530 5' -60.2 NC_002169.1 + 84110 0.69 0.531076
Target:  5'- -aGUCGCUGaUCaCCgauauuagagcGCCGUUGUCGUCa -3'
miRNA:   3'- aaCAGCGGC-AGcGG-----------CGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 128850 0.73 0.325874
Target:  5'- -cGUCGCCGUUGaCGUuccucuCGUCGUCGUUg -3'
miRNA:   3'- aaCAGCGGCAGCgGCG------GCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 53473 0.73 0.340568
Target:  5'- -gGUCGUCGcCGCCGCCGgUGUCaUCg -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 48140 0.72 0.348093
Target:  5'- ---cCGCCGUCGgCGCCGUCGU-GUg -3'
miRNA:   3'- aacaGCGGCAGCgGCGGCAGCAgCAg -5'
8530 5' -60.2 NC_002169.1 + 135097 0.72 0.355736
Target:  5'- -cGUCGUCGUCGUCcUCGUCcUCGUCg -3'
miRNA:   3'- aaCAGCGGCAGCGGcGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 62980 0.72 0.371373
Target:  5'- -cGUCGUCGUUcaucguccgGCgGCCGUCGUCG-Ca -3'
miRNA:   3'- aaCAGCGGCAG---------CGgCGGCAGCAGCaG- -5'
8530 5' -60.2 NC_002169.1 + 40729 0.71 0.421015
Target:  5'- aUGUCGCCGUCGCCGCaauacUUGUUc -3'
miRNA:   3'- aACAGCGGCAGCGGCGgcagcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 34435 0.69 0.502417
Target:  5'- aUGUUGuuGUUGuuGUCGUCGUUGg- -3'
miRNA:   3'- aACAGCggCAGCggCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 117692 0.69 0.502417
Target:  5'- aUGcgCGCCGcUC-CCGUCGUCGUCGa- -3'
miRNA:   3'- aACa-GCGGC-AGcGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 5555 0.69 0.511898
Target:  5'- --aUUGuuGUUGCUGCCGUCGcCGUa -3'
miRNA:   3'- aacAGCggCAGCGGCGGCAGCaGCAg -5'
8530 5' -60.2 NC_002169.1 + 39375 0.69 0.511898
Target:  5'- --aUUGCCGaUCGgcaCCGCCGUCGUCaUCg -3'
miRNA:   3'- aacAGCGGC-AGC---GGCGGCAGCAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.