Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8530 | 5' | -60.2 | NC_002169.1 | + | 40729 | 0.71 | 0.421015 |
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Target: 5'- aUGUCGCCGUCGCCGCaauacUUGUUc -3' miRNA: 3'- aACAGCGGCAGCGGCGgcagcAGCAG- -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 70704 | 0.7 | 0.465306 |
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Target: 5'- -cGUCGUCGUCGgCGggcUUGUCGUCGUg -3' miRNA: 3'- aaCAGCGGCAGCgGC---GGCAGCAGCAg -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 34435 | 0.69 | 0.502417 |
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Target: 5'- aUGUUGuuGUUGuuGUCGUCGUUGg- -3' miRNA: 3'- aACAGCggCAGCggCGGCAGCAGCag -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 117692 | 0.69 | 0.502417 |
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Target: 5'- aUGcgCGCCGcUC-CCGUCGUCGUCGa- -3' miRNA: 3'- aACa-GCGGC-AGcGGCGGCAGCAGCag -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 5555 | 0.69 | 0.511898 |
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Target: 5'- --aUUGuuGUUGCUGCCGUCGcCGUa -3' miRNA: 3'- aacAGCggCAGCGGCGGCAGCaGCAg -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 39375 | 0.69 | 0.511898 |
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Target: 5'- --aUUGCCGaUCGgcaCCGCCGUCGUCaUCg -3' miRNA: 3'- aacAGCGGC-AGC---GGCGGCAGCAGcAG- -5' |
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| 8530 | 5' | -60.2 | NC_002169.1 | + | 75704 | 0.66 | 0.728697 |
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Target: 5'- --aUCGCCGUCaCCaUCGaCGUCGUCu -3' miRNA: 3'- aacAGCGGCAGcGGcGGCaGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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