miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 103846 0.67 0.619887
Target:  5'- gUGUCGUCuUCGUCGUCGUCGUa--- -3'
miRNA:   3'- aACAGCGGcAGCGGCGGCAGCAgcag -5'
8530 5' -60.2 NC_002169.1 + 9237 0.68 0.61389
Target:  5'- aUUGUCGUCGUCGUCGUUgugacuuguuuguugGUCGaCGUUg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGG---------------CAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 15825 0.68 0.599919
Target:  5'- -cGUCGUCGUgacCGCCGCCGaCGcugccgcaaugCGUCa -3'
miRNA:   3'- aaCAGCGGCA---GCGGCGGCaGCa----------GCAG- -5'
8530 5' -60.2 NC_002169.1 + 51424 0.68 0.599919
Target:  5'- -aGUCGuuGgguagggUGCCGuuGaCGUCGUCg -3'
miRNA:   3'- aaCAGCggCa------GCGGCggCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 26367 0.68 0.599919
Target:  5'- aUUGUaaaaGCCuUCGCCGgCGaCGUCGUUg -3'
miRNA:   3'- -AACAg---CGGcAGCGGCgGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 56804 0.68 0.589966
Target:  5'- --aUUGUCGUCGCCGUCGUUacgUGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGca-GCAG- -5'
8530 5' -60.2 NC_002169.1 + 19605 0.68 0.589966
Target:  5'- -gGUCGuuGUCGUugCGCCGgucCGUCGa- -3'
miRNA:   3'- aaCAGCggCAGCG--GCGGCa--GCAGCag -5'
8530 5' -60.2 NC_002169.1 + 81964 0.68 0.589966
Target:  5'- --cUCGUCGUCGgUGUCGUCGaUGUCg -3'
miRNA:   3'- aacAGCGGCAGCgGCGGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 78129 0.68 0.589966
Target:  5'- ---cCGCCGa-GCCGCCGUCGguccgCGUa -3'
miRNA:   3'- aacaGCGGCagCGGCGGCAGCa----GCAg -5'
8530 5' -60.2 NC_002169.1 + 96156 0.68 0.580042
Target:  5'- --cUCGCCGcacgacaacaugUCGCCGCCGUCGaccaucaCGUUu -3'
miRNA:   3'- aacAGCGGC------------AGCGGCGGCAGCa------GCAG- -5'
8530 5' -60.2 NC_002169.1 + 92761 0.68 0.570154
Target:  5'- uUUGUCGUCGUCGCCuCC-UCGcaaaCGUCc -3'
miRNA:   3'- -AACAGCGGCAGCGGcGGcAGCa---GCAG- -5'
8530 5' -60.2 NC_002169.1 + 118934 0.69 0.531076
Target:  5'- -cGgCGgCGUCGUCGuuGUCGUCGg- -3'
miRNA:   3'- aaCaGCgGCAGCGGCggCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 3551 0.69 0.531076
Target:  5'- --uUCGUCGUCGuuGUCGUCccuGUCGUUu -3'
miRNA:   3'- aacAGCGGCAGCggCGGCAG---CAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 84110 0.69 0.531076
Target:  5'- -aGUCGCUGaUCaCCgauauuagagcGCCGUUGUCGUCa -3'
miRNA:   3'- aaCAGCGGC-AGcGG-----------CGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 5555 0.69 0.511898
Target:  5'- --aUUGuuGUUGCUGCCGUCGcCGUa -3'
miRNA:   3'- aacAGCggCAGCGGCGGCAGCaGCAg -5'
8530 5' -60.2 NC_002169.1 + 39375 0.69 0.511898
Target:  5'- --aUUGCCGaUCGgcaCCGCCGUCGUCaUCg -3'
miRNA:   3'- aacAGCGGC-AGC---GGCGGCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 117692 0.69 0.502417
Target:  5'- aUGcgCGCCGcUC-CCGUCGUCGUCGa- -3'
miRNA:   3'- aACa-GCGGC-AGcGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 34435 0.69 0.502417
Target:  5'- aUGUUGuuGUUGuuGUCGUCGUUGg- -3'
miRNA:   3'- aACAGCggCAGCggCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 128106 0.69 0.502417
Target:  5'- -cGcCGCCGcCGCCGCCGcCGcCGcCu -3'
miRNA:   3'- aaCaGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 9738 0.7 0.493013
Target:  5'- -cGUCGaCGUCGUCGUCGUCuccauuGUUGUCu -3'
miRNA:   3'- aaCAGCgGCAGCGGCGGCAG------CAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.