Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8531 | 3' | -48.5 | NC_002169.1 | + | 6095 | 1.1 | 0.01306 |
Target: 5'- gAGCGGAAUAUAUAACGACGUCGCCGAc -3' miRNA: 3'- -UCGCCUUAUAUAUUGCUGCAGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 6293 | 0.72 | 0.953259 |
Target: 5'- --aGGAAUAUGUucAACGACGUCGaaCUGAa -3' miRNA: 3'- ucgCCUUAUAUA--UUGCUGCAGC--GGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 18155 | 0.66 | 0.998588 |
Target: 5'- -aCGGAAaccgAUAUAGCGGCGcUGcCCGAa -3' miRNA: 3'- ucGCCUUa---UAUAUUGCUGCaGC-GGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 21983 | 0.67 | 0.996546 |
Target: 5'- cGUGGAAguucUAUGACGGCGUCcacaUCGAu -3' miRNA: 3'- uCGCCUUau--AUAUUGCUGCAGc---GGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 22414 | 0.69 | 0.990117 |
Target: 5'- cGCGGAugg---AGCGGCGUCGUgagCGAc -3' miRNA: 3'- uCGCCUuauauaUUGCUGCAGCG---GCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 25675 | 0.69 | 0.988707 |
Target: 5'- cGCGaAAUAUAggAGCGACGgcgaacCGCCGGg -3' miRNA: 3'- uCGCcUUAUAUa-UUGCUGCa-----GCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 26197 | 0.69 | 0.990117 |
Target: 5'- cAGCGc-------AACGACGUCGCCGGc -3' miRNA: 3'- -UCGCcuuauauaUUGCUGCAGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 26849 | 0.71 | 0.966091 |
Target: 5'- gGGUGGAAUAauuUAUAauGCGACGacuugaagcguuucaUUGCCGAa -3' miRNA: 3'- -UCGCCUUAU---AUAU--UGCUGC---------------AGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 27433 | 0.67 | 0.997547 |
Target: 5'- uGGCGGAAaacuuUGaAACGAUGggCGCCGu -3' miRNA: 3'- -UCGCCUUau---AUaUUGCUGCa-GCGGCu -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 30308 | 0.67 | 0.997949 |
Target: 5'- uGGUGGuau-UGUcGACGACGcCGCCGc -3' miRNA: 3'- -UCGCCuuauAUA-UUGCUGCaGCGGCu -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 30483 | 0.74 | 0.891283 |
Target: 5'- cGGCGGcAAcGUGagcGGCGGCGUCGUCGAc -3' miRNA: 3'- -UCGCC-UUaUAUa--UUGCUGCAGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 32268 | 0.7 | 0.982723 |
Target: 5'- cGGCGacagcucgGUAcACGGCGUCGCCGGc -3' miRNA: 3'- -UCGCcuuaua--UAU-UGCUGCAGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 32461 | 0.71 | 0.972356 |
Target: 5'- cGGCGGAAUcacgcgugAUAUGcaauuggccgGCGACGccguguaccgagcugUCGCCGAa -3' miRNA: 3'- -UCGCCUUA--------UAUAU----------UGCUGC---------------AGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 32870 | 0.66 | 0.998838 |
Target: 5'- gAGuCGuGAUAaguuUGUcGACGACGUCGUCGAc -3' miRNA: 3'- -UC-GCcUUAU----AUA-UUGCUGCAGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 34440 | 0.66 | 0.998588 |
Target: 5'- cGgGGAAcAUGacAAUGACGUCGuuGAa -3' miRNA: 3'- uCgCCUUaUAUa-UUGCUGCAGCggCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 34511 | 0.69 | 0.990117 |
Target: 5'- cGGCGGc------GGCGcCGUCGCCGAu -3' miRNA: 3'- -UCGCCuuauauaUUGCuGCAGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 39432 | 0.68 | 0.992521 |
Target: 5'- cGCGGA--------CGGCGUCGUCGAc -3' miRNA: 3'- uCGCCUuauauauuGCUGCAGCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 39544 | 0.74 | 0.898227 |
Target: 5'- uGGCGGcg---AUGACGACGgcggUGCCGAu -3' miRNA: 3'- -UCGCCuuauaUAUUGCUGCa---GCGGCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 46242 | 0.66 | 0.999228 |
Target: 5'- uGCGGAAUGUuuuGUAGCGuuGaCGCgGGc -3' miRNA: 3'- uCGCCUUAUA---UAUUGCugCaGCGgCU- -5' |
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8531 | 3' | -48.5 | NC_002169.1 | + | 48175 | 0.67 | 0.997547 |
Target: 5'- uGCGGAAaucgagAUAGCGGCaUCGCgGGc -3' miRNA: 3'- uCGCCUUaua---UAUUGCUGcAGCGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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