miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8531 3' -48.5 NC_002169.1 + 26197 0.69 0.990117
Target:  5'- cAGCGc-------AACGACGUCGCCGGc -3'
miRNA:   3'- -UCGCcuuauauaUUGCUGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 34511 0.69 0.990117
Target:  5'- cGGCGGc------GGCGcCGUCGCCGAu -3'
miRNA:   3'- -UCGCCuuauauaUUGCuGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 25675 0.69 0.988707
Target:  5'- cGCGaAAUAUAggAGCGACGgcgaacCGCCGGg -3'
miRNA:   3'- uCGCcUUAUAUa-UUGCUGCa-----GCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 32268 0.7 0.982723
Target:  5'- cGGCGacagcucgGUAcACGGCGUCGCCGGc -3'
miRNA:   3'- -UCGCcuuaua--UAU-UGCUGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 108717 0.7 0.974061
Target:  5'- cGUGGAAUGUGgcgGCGGCGgCGgCGAc -3'
miRNA:   3'- uCGCCUUAUAUau-UGCUGCaGCgGCU- -5'
8531 3' -48.5 NC_002169.1 + 32461 0.71 0.972356
Target:  5'- cGGCGGAAUcacgcgugAUAUGcaauuggccgGCGACGccguguaccgagcugUCGCCGAa -3'
miRNA:   3'- -UCGCCUUA--------UAUAU----------UGCUGC---------------AGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 26849 0.71 0.966091
Target:  5'- gGGUGGAAUAauuUAUAauGCGACGacuugaagcguuucaUUGCCGAa -3'
miRNA:   3'- -UCGCCUUAU---AUAU--UGCUGC---------------AGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 88971 0.71 0.96115
Target:  5'- -aUGGAGacgcgAUAUGACGAaacgGUCGCCGAa -3'
miRNA:   3'- ucGCCUUa----UAUAUUGCUg---CAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 6293 0.72 0.953259
Target:  5'- --aGGAAUAUGUucAACGACGUCGaaCUGAa -3'
miRNA:   3'- ucgCCUUAUAUA--UUGCUGCAGC--GGCU- -5'
8531 3' -48.5 NC_002169.1 + 116021 0.73 0.917504
Target:  5'- cGCGGGAUcuacGUA-AGCGACGUUGCUGu -3'
miRNA:   3'- uCGCCUUA----UAUaUUGCUGCAGCGGCu -5'
8531 3' -48.5 NC_002169.1 + 107821 0.73 0.91134
Target:  5'- cGGCucuGAuUAUA-GGCGGCGUCGCCGAu -3'
miRNA:   3'- -UCGc--CUuAUAUaUUGCUGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 39544 0.74 0.898227
Target:  5'- uGGCGGcg---AUGACGACGgcggUGCCGAu -3'
miRNA:   3'- -UCGCCuuauaUAUUGCUGCa---GCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 30483 0.74 0.891283
Target:  5'- cGGCGGcAAcGUGagcGGCGGCGUCGUCGAc -3'
miRNA:   3'- -UCGCC-UUaUAUa--UUGCUGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 107493 0.76 0.818145
Target:  5'- gAGCGcguuGAGguuacagAACGACGUCGCCGAa -3'
miRNA:   3'- -UCGC----CUUauaua--UUGCUGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 6095 1.1 0.01306
Target:  5'- gAGCGGAAUAUAUAACGACGUCGCCGAc -3'
miRNA:   3'- -UCGCCUUAUAUAUUGCUGCAGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.