miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8532 3' -65.1 NC_002169.1 + 8553 0.66 0.509545
Target:  5'- gGUGGUgugauaGCUGCCGCCGguUCGCCuaaguGCCu -3'
miRNA:   3'- aCAUCAg-----CGGCGGCGGC--GGCGG-----CGGc -5'
8532 3' -65.1 NC_002169.1 + 51228 0.66 0.500396
Target:  5'- --aAGUCGUCGUCgGCCGUCGUcucguacaaaauCGCCa -3'
miRNA:   3'- acaUCAGCGGCGG-CGGCGGCG------------GCGGc -5'
8532 3' -65.1 NC_002169.1 + 41293 0.66 0.500396
Target:  5'- ---uGUCGuuGCCGUCGaCGUCGUCa -3'
miRNA:   3'- acauCAGCggCGGCGGCgGCGGCGGc -5'
8532 3' -65.1 NC_002169.1 + 107156 0.66 0.500396
Target:  5'- aGUAauccUCGUCGauGCCGCCGuuGUCGu -3'
miRNA:   3'- aCAUc---AGCGGCggCGGCGGCggCGGC- -5'
8532 3' -65.1 NC_002169.1 + 78612 0.66 0.500396
Target:  5'- cGUAGUCGCCGCaagcgaucguauUGCaucuguGCUGCUGCa- -3'
miRNA:   3'- aCAUCAGCGGCG------------GCGg-----CGGCGGCGgc -5'
8532 3' -65.1 NC_002169.1 + 104652 0.66 0.500396
Target:  5'- aGUuGUUGUCGauaCCGuuGCCGuuGCCu -3'
miRNA:   3'- aCAuCAGCGGC---GGCggCGGCggCGGc -5'
8532 3' -65.1 NC_002169.1 + 123553 0.66 0.500396
Target:  5'- --aGGUCGCgguacaauUGCCuguuuaCCGUCGCCGCCa -3'
miRNA:   3'- acaUCAGCG--------GCGGc-----GGCGGCGGCGGc -5'
8532 3' -65.1 NC_002169.1 + 117696 0.66 0.49132
Target:  5'- -----gCGCCGCUcCCGUCGUCGUCGa -3'
miRNA:   3'- acaucaGCGGCGGcGGCGGCGGCGGC- -5'
8532 3' -65.1 NC_002169.1 + 84107 0.66 0.488612
Target:  5'- aGUAGUCGCUGaUcaccgauauuagagCGCCGuuGUCGUCa -3'
miRNA:   3'- aCAUCAGCGGC-G--------------GCGGCggCGGCGGc -5'
8532 3' -65.1 NC_002169.1 + 95214 0.66 0.48232
Target:  5'- ---uGUCGCCGUCGCaGuCCGUguuagCGCCGg -3'
miRNA:   3'- acauCAGCGGCGGCGgC-GGCG-----GCGGC- -5'
8532 3' -65.1 NC_002169.1 + 3869 0.66 0.473402
Target:  5'- uUGUAuaaUGUCGUCGUCGUCGUCGUCGg -3'
miRNA:   3'- -ACAUca-GCGGCGGCGGCGGCGGCGGC- -5'
8532 3' -65.1 NC_002169.1 + 45414 0.66 0.472514
Target:  5'- uUGUcuUCGCCGgCGCCGaaaCGCuuguauuCGCCGa -3'
miRNA:   3'- -ACAucAGCGGCgGCGGCg--GCG-------GCGGC- -5'
8532 3' -65.1 NC_002169.1 + 22580 0.66 0.464567
Target:  5'- gUGUcGUCGCucacgaCGCCGCUccauCCGCgGCCGu -3'
miRNA:   3'- -ACAuCAGCG------GCGGCGGc---GGCGgCGGC- -5'
8532 3' -65.1 NC_002169.1 + 76749 0.66 0.463688
Target:  5'- cGUAGUCGgCGUCGCUGCCuaucuucaucuggGUCGUg- -3'
miRNA:   3'- aCAUCAGCgGCGGCGGCGG-------------CGGCGgc -5'
8532 3' -65.1 NC_002169.1 + 59308 0.66 0.455819
Target:  5'- ---cGUCGgUGCUGCUGCUGuuGUCGa -3'
miRNA:   3'- acauCAGCgGCGGCGGCGGCggCGGC- -5'
8532 3' -65.1 NC_002169.1 + 125310 0.66 0.455819
Target:  5'- --cAGUUuaCGCUGCaGCCGCCGuuGa -3'
miRNA:   3'- acaUCAGcgGCGGCGgCGGCGGCggC- -5'
8532 3' -65.1 NC_002169.1 + 3201 0.67 0.437742
Target:  5'- gGUGGUUGUgaugauuCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- aCAUCAGCG-------GCGGCGGCGGCGGCGGc -5'
8532 3' -65.1 NC_002169.1 + 39389 0.67 0.430121
Target:  5'- -----cCGCCGUCGUCaUCGCCGCCa -3'
miRNA:   3'- acaucaGCGGCGGCGGcGGCGGCGGc -5'
8532 3' -65.1 NC_002169.1 + 112273 0.67 0.421746
Target:  5'- ---cGUCGaggaCGCCGgCGaCUGCCGCCu -3'
miRNA:   3'- acauCAGCg---GCGGCgGC-GGCGGCGGc -5'
8532 3' -65.1 NC_002169.1 + 4532 0.67 0.41347
Target:  5'- -uUAG-CGUCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- acAUCaGCGGCGGCGGCGGCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.