Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8532 | 5' | -52.7 | NC_002169.1 | + | 25804 | 0.66 | 0.962074 |
|
Target: 5'- --gCUCuuGuaGGCGAGCCGgcAUGCGGg -3' miRNA: 3'- gagGAGuuUcgUCGCUCGGU--UACGUC- -5' |
|||||||
| 8532 | 5' | -52.7 | NC_002169.1 | + | 81694 | 0.66 | 0.962074 |
|
Target: 5'- -gCCagCAAcAGCGGCgccagcucGAGCCGAUGCAa -3' miRNA: 3'- gaGGa-GUU-UCGUCG--------CUCGGUUACGUc -5' |
|||||||
| 8532 | 5' | -52.7 | NC_002169.1 | + | 130391 | 0.66 | 0.962074 |
|
Target: 5'- gCUCUUCcaaucuAGCAGUcAGCCGGgcgGCAGu -3' miRNA: 3'- -GAGGAGuu----UCGUCGcUCGGUUa--CGUC- -5' |
|||||||
| 8532 | 5' | -52.7 | NC_002169.1 | + | 63314 | 0.67 | 0.925116 |
|
Target: 5'- cCUCCUCccgaAGAGCGGCGucuagAGCUGcgGCGc -3' miRNA: 3'- -GAGGAG----UUUCGUCGC-----UCGGUuaCGUc -5' |
|||||||
| 8532 | 5' | -52.7 | NC_002169.1 | + | 124919 | 0.69 | 0.847586 |
|
Target: 5'- gUCCUCGguggGGGCGGCG-GCgGcgGCGGc -3' miRNA: 3'- gAGGAGU----UUCGUCGCuCGgUuaCGUC- -5' |
|||||||
| 8532 | 5' | -52.7 | NC_002169.1 | + | 63022 | 0.71 | 0.77464 |
|
Target: 5'- aCUCgUCGAAGCAGCGGuggguauagacGUCGAaGCAGc -3' miRNA: 3'- -GAGgAGUUUCGUCGCU-----------CGGUUaCGUC- -5' |
|||||||
| 8532 | 5' | -52.7 | NC_002169.1 | + | 57159 | 0.77 | 0.453324 |
|
Target: 5'- uUCCUCAGccGGCGGCGuccaaagcGGCCAcgGCGGc -3' miRNA: 3'- gAGGAGUU--UCGUCGC--------UCGGUuaCGUC- -5' |
|||||||
| 8532 | 5' | -52.7 | NC_002169.1 | + | 6259 | 1.09 | 0.004382 |
|
Target: 5'- cCUCCUCAAAGCAGCGAGCCAAUGCAGu -3' miRNA: 3'- -GAGGAGUUUCGUCGCUCGGUUACGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home