miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8533 5' -52 NC_002169.1 + 112750 0.65 0.987956
Target:  5'- uGCGUUGGUugucGUCGAcaaaguuaacgcaaUGUCGGCGUCGu -3'
miRNA:   3'- cUGCAGCUA----CGGCU--------------ACAGCUGUAGCu -5'
8533 5' -52 NC_002169.1 + 109392 0.66 0.986859
Target:  5'- cGACGUCGucguUGUCGucGUCGuCGUCGu -3'
miRNA:   3'- -CUGCAGCu---ACGGCuaCAGCuGUAGCu -5'
8533 5' -52 NC_002169.1 + 127249 0.66 0.986859
Target:  5'- --gGUaaaGAUGCCGcuguUGUCGACGaCGAc -3'
miRNA:   3'- cugCAg--CUACGGCu---ACAGCUGUaGCU- -5'
8533 5' -52 NC_002169.1 + 127612 0.66 0.985159
Target:  5'- uGACGaugauaUCGgcGCCGuUGUCGAagAUCGAg -3'
miRNA:   3'- -CUGC------AGCuaCGGCuACAGCUg-UAGCU- -5'
8533 5' -52 NC_002169.1 + 59307 0.66 0.985159
Target:  5'- -uCGUCGGUGCUGcugcuguUGUCGAUgacuuuacguguAUCGAc -3'
miRNA:   3'- cuGCAGCUACGGCu------ACAGCUG------------UAGCU- -5'
8533 5' -52 NC_002169.1 + 39230 0.66 0.984799
Target:  5'- gGGCGaugCGAUGCCaGAUGgucugguuggaGGCGUCGGu -3'
miRNA:   3'- -CUGCa--GCUACGG-CUACag---------CUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 120401 0.66 0.983296
Target:  5'- uGACcgaaUCGAUGuuGAUGUUGGCGcUGAc -3'
miRNA:   3'- -CUGc---AGCUACggCUACAGCUGUaGCU- -5'
8533 5' -52 NC_002169.1 + 48826 0.66 0.981262
Target:  5'- cGACGUCG-UGCaCGAUcUUGAUcUCGAa -3'
miRNA:   3'- -CUGCAGCuACG-GCUAcAGCUGuAGCU- -5'
8533 5' -52 NC_002169.1 + 128811 0.66 0.979048
Target:  5'- cGACGU-GAUcGUCGaAUGUCGACAaCGGc -3'
miRNA:   3'- -CUGCAgCUA-CGGC-UACAGCUGUaGCU- -5'
8533 5' -52 NC_002169.1 + 119850 0.66 0.979048
Target:  5'- uGACGUUGGUuUCGA--UCGACAUUGAc -3'
miRNA:   3'- -CUGCAGCUAcGGCUacAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 55500 0.67 0.976645
Target:  5'- aGCG-CGAUGCCGccgccgcUGUCGuCGUCGu -3'
miRNA:   3'- cUGCaGCUACGGCu------ACAGCuGUAGCu -5'
8533 5' -52 NC_002169.1 + 97075 0.67 0.968231
Target:  5'- --gGUCGAcgcUGCCGAcggUGUCGACGaCGc -3'
miRNA:   3'- cugCAGCU---ACGGCU---ACAGCUGUaGCu -5'
8533 5' -52 NC_002169.1 + 44142 0.67 0.965
Target:  5'- cGACGUCGAaaaucUCGAUGgUGACAUCGu -3'
miRNA:   3'- -CUGCAGCUac---GGCUACaGCUGUAGCu -5'
8533 5' -52 NC_002169.1 + 39532 0.68 0.95786
Target:  5'- cGACGgCGGUGCCGA--UCGGCAauaugagCGAc -3'
miRNA:   3'- -CUGCaGCUACGGCUacAGCUGUa------GCU- -5'
8533 5' -52 NC_002169.1 + 4448 0.68 0.953941
Target:  5'- -gUGUCGGUGUCGGUaUCGuCAUCGu -3'
miRNA:   3'- cuGCAGCUACGGCUAcAGCuGUAGCu -5'
8533 5' -52 NC_002169.1 + 55977 0.68 0.949783
Target:  5'- cGGCGUU-AUGCCGugcGUGUCGGCAaUGAc -3'
miRNA:   3'- -CUGCAGcUACGGC---UACAGCUGUaGCU- -5'
8533 5' -52 NC_002169.1 + 43516 0.68 0.949783
Target:  5'- cACGUCGAUGCCGuaaAUGUUGcCcaagguguacguGUCGAu -3'
miRNA:   3'- cUGCAGCUACGGC---UACAGCuG------------UAGCU- -5'
8533 5' -52 NC_002169.1 + 69800 0.68 0.945382
Target:  5'- uGAgGUCGGgcaCCGAUGUgGuCGUCGAg -3'
miRNA:   3'- -CUgCAGCUac-GGCUACAgCuGUAGCU- -5'
8533 5' -52 NC_002169.1 + 28053 0.68 0.945382
Target:  5'- aGGCGaUCGAcgcgcucgUGCCGAUgGUCGGCAUg-- -3'
miRNA:   3'- -CUGC-AGCU--------ACGGCUA-CAGCUGUAgcu -5'
8533 5' -52 NC_002169.1 + 57759 0.69 0.930698
Target:  5'- cGACGUaaAUGUCGugcacGUCGGCGUCGGa -3'
miRNA:   3'- -CUGCAgcUACGGCua---CAGCUGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.