miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8533 5' -52 NC_002169.1 + 75006 0.7 0.88061
Target:  5'- -cCGUCGAcaucgGCUGGaccGUCGACAUCGGc -3'
miRNA:   3'- cuGCAGCUa----CGGCUa--CAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 125258 0.7 0.894596
Target:  5'- --aGUCGAUGUCGAUuUCGAgAUCGc -3'
miRNA:   3'- cugCAGCUACGGCUAcAGCUgUAGCu -5'
8533 5' -52 NC_002169.1 + 128992 0.71 0.849906
Target:  5'- cGGCGaCGAguuaucuuUGCCGuUGUCGACAUuCGAc -3'
miRNA:   3'- -CUGCaGCU--------ACGGCuACAGCUGUA-GCU- -5'
8533 5' -52 NC_002169.1 + 44715 0.71 0.865699
Target:  5'- uGAUGUUGAUGuuGAcuauacUGUCGGCGgcggCGAa -3'
miRNA:   3'- -CUGCAGCUACggCU------ACAGCUGUa---GCU- -5'
8533 5' -52 NC_002169.1 + 107164 0.71 0.857909
Target:  5'- -uCGUCGAUGCCGccguUGUCGuACA-CGGa -3'
miRNA:   3'- cuGCAGCUACGGCu---ACAGC-UGUaGCU- -5'
8533 5' -52 NC_002169.1 + 77630 0.72 0.797814
Target:  5'- uGCGUCGAcGCCGAaccgUGUagcguccaCGGCGUCGAc -3'
miRNA:   3'- cUGCAGCUaCGGCU----ACA--------GCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 60219 0.72 0.797814
Target:  5'- cGGCGgCGAUGUCGAUGaucUCGAauaAUCGAa -3'
miRNA:   3'- -CUGCaGCUACGGCUAC---AGCUg--UAGCU- -5'
8533 5' -52 NC_002169.1 + 127885 0.73 0.753959
Target:  5'- uGACGUUGAaacaucacucuuUGUCGAUGUCGucgcccucuucauuuACAUCGAa -3'
miRNA:   3'- -CUGCAGCU------------ACGGCUACAGC---------------UGUAGCU- -5'
8533 5' -52 NC_002169.1 + 6945 0.75 0.689192
Target:  5'- cGGCaUCGAUGUCGAcaUCGGCAUCGAc -3'
miRNA:   3'- -CUGcAGCUACGGCUacAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 124385 0.77 0.559946
Target:  5'- uGGCGUCGAUGgUGAguaugucgucuucGUCGGCAUCGAc -3'
miRNA:   3'- -CUGCAGCUACgGCUa------------CAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 75242 0.79 0.464457
Target:  5'- cGAUGUCGAUgguccaGCCGAUGUCGAUgguccggccgauGUCGAu -3'
miRNA:   3'- -CUGCAGCUA------CGGCUACAGCUG------------UAGCU- -5'
8533 5' -52 NC_002169.1 + 81960 0.79 0.464457
Target:  5'- -uCGUCGGUGUcguCGAUGUCGACGUCa- -3'
miRNA:   3'- cuGCAGCUACG---GCUACAGCUGUAGcu -5'
8533 5' -52 NC_002169.1 + 75134 0.8 0.418172
Target:  5'- cGAUGUCGAUGguguaaCCGAUGUCGAUgauGUCGAc -3'
miRNA:   3'- -CUGCAGCUAC------GGCUACAGCUG---UAGCU- -5'
8533 5' -52 NC_002169.1 + 75188 0.8 0.400459
Target:  5'- cGAUGUCGAUgguccgGCCGAUGUCGACgguccagccgauGUCGAc -3'
miRNA:   3'- -CUGCAGCUA------CGGCUACAGCUG------------UAGCU- -5'
8533 5' -52 NC_002169.1 + 6744 0.85 0.211086
Target:  5'- cGACGUCGAUGCCccUGcCGACGUCGAu -3'
miRNA:   3'- -CUGCAGCUACGGcuACaGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 6780 1.1 0.006529
Target:  5'- cGACGUCGAUGCCGAUGUCGACAUCGAu -3'
miRNA:   3'- -CUGCAGCUACGGCUACAGCUGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.