Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8533 | 5' | -52 | NC_002169.1 | + | 75242 | 0.79 | 0.464457 |
Target: 5'- cGAUGUCGAUgguccaGCCGAUGUCGAUgguccggccgauGUCGAu -3' miRNA: 3'- -CUGCAGCUA------CGGCUACAGCUG------------UAGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 77630 | 0.72 | 0.797814 |
Target: 5'- uGCGUCGAcGCCGAaccgUGUagcguccaCGGCGUCGAc -3' miRNA: 3'- cUGCAGCUaCGGCU----ACA--------GCUGUAGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 81960 | 0.79 | 0.464457 |
Target: 5'- -uCGUCGGUGUcguCGAUGUCGACGUCa- -3' miRNA: 3'- cuGCAGCUACG---GCUACAGCUGUAGcu -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 97075 | 0.67 | 0.968231 |
Target: 5'- --gGUCGAcgcUGCCGAcggUGUCGACGaCGc -3' miRNA: 3'- cugCAGCU---ACGGCU---ACAGCUGUaGCu -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 107164 | 0.71 | 0.857909 |
Target: 5'- -uCGUCGAUGCCGccguUGUCGuACA-CGGa -3' miRNA: 3'- cuGCAGCUACGGCu---ACAGC-UGUaGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 109392 | 0.66 | 0.986859 |
Target: 5'- cGACGUCGucguUGUCGucGUCGuCGUCGu -3' miRNA: 3'- -CUGCAGCu---ACGGCuaCAGCuGUAGCu -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 112750 | 0.65 | 0.987956 |
Target: 5'- uGCGUUGGUugucGUCGAcaaaguuaacgcaaUGUCGGCGUCGu -3' miRNA: 3'- cUGCAGCUA----CGGCU--------------ACAGCUGUAGCu -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 119850 | 0.66 | 0.979048 |
Target: 5'- uGACGUUGGUuUCGA--UCGACAUUGAc -3' miRNA: 3'- -CUGCAGCUAcGGCUacAGCUGUAGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 120401 | 0.66 | 0.983296 |
Target: 5'- uGACcgaaUCGAUGuuGAUGUUGGCGcUGAc -3' miRNA: 3'- -CUGc---AGCUACggCUACAGCUGUaGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 124385 | 0.77 | 0.559946 |
Target: 5'- uGGCGUCGAUGgUGAguaugucgucuucGUCGGCAUCGAc -3' miRNA: 3'- -CUGCAGCUACgGCUa------------CAGCUGUAGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 125258 | 0.7 | 0.894596 |
Target: 5'- --aGUCGAUGUCGAUuUCGAgAUCGc -3' miRNA: 3'- cugCAGCUACGGCUAcAGCUgUAGCu -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 127249 | 0.66 | 0.986859 |
Target: 5'- --gGUaaaGAUGCCGcuguUGUCGACGaCGAc -3' miRNA: 3'- cugCAg--CUACGGCu---ACAGCUGUaGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 127612 | 0.66 | 0.985159 |
Target: 5'- uGACGaugauaUCGgcGCCGuUGUCGAagAUCGAg -3' miRNA: 3'- -CUGC------AGCuaCGGCuACAGCUg-UAGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 127885 | 0.73 | 0.753959 |
Target: 5'- uGACGUUGAaacaucacucuuUGUCGAUGUCGucgcccucuucauuuACAUCGAa -3' miRNA: 3'- -CUGCAGCU------------ACGGCUACAGC---------------UGUAGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 128811 | 0.66 | 0.979048 |
Target: 5'- cGACGU-GAUcGUCGaAUGUCGACAaCGGc -3' miRNA: 3'- -CUGCAgCUA-CGGC-UACAGCUGUaGCU- -5' |
|||||||
8533 | 5' | -52 | NC_002169.1 | + | 128992 | 0.71 | 0.849906 |
Target: 5'- cGGCGaCGAguuaucuuUGCCGuUGUCGACAUuCGAc -3' miRNA: 3'- -CUGCaGCU--------ACGGCuACAGCUGUA-GCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home