miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8533 5' -52 NC_002169.1 + 6780 1.1 0.006529
Target:  5'- cGACGUCGAUGCCGAUGUCGACAUCGAu -3'
miRNA:   3'- -CUGCAGCUACGGCUACAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 44142 0.67 0.965
Target:  5'- cGACGUCGAaaaucUCGAUGgUGACAUCGu -3'
miRNA:   3'- -CUGCAGCUac---GGCUACaGCUGUAGCu -5'
8533 5' -52 NC_002169.1 + 128811 0.66 0.979048
Target:  5'- cGACGU-GAUcGUCGaAUGUCGACAaCGGc -3'
miRNA:   3'- -CUGCAgCUA-CGGC-UACAGCUGUaGCU- -5'
8533 5' -52 NC_002169.1 + 119850 0.66 0.979048
Target:  5'- uGACGUUGGUuUCGA--UCGACAUUGAc -3'
miRNA:   3'- -CUGCAGCUAcGGCUacAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 120401 0.66 0.983296
Target:  5'- uGACcgaaUCGAUGuuGAUGUUGGCGcUGAc -3'
miRNA:   3'- -CUGc---AGCUACggCUACAGCUGUaGCU- -5'
8533 5' -52 NC_002169.1 + 39230 0.66 0.984799
Target:  5'- gGGCGaugCGAUGCCaGAUGgucugguuggaGGCGUCGGu -3'
miRNA:   3'- -CUGCa--GCUACGG-CUACag---------CUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 59307 0.66 0.985159
Target:  5'- -uCGUCGGUGCUGcugcuguUGUCGAUgacuuuacguguAUCGAc -3'
miRNA:   3'- cuGCAGCUACGGCu------ACAGCUG------------UAGCU- -5'
8533 5' -52 NC_002169.1 + 127249 0.66 0.986859
Target:  5'- --gGUaaaGAUGCCGcuguUGUCGACGaCGAc -3'
miRNA:   3'- cugCAg--CUACGGCu---ACAGCUGUaGCU- -5'
8533 5' -52 NC_002169.1 + 112750 0.65 0.987956
Target:  5'- uGCGUUGGUugucGUCGAcaaaguuaacgcaaUGUCGGCGUCGu -3'
miRNA:   3'- cUGCAGCUA----CGGCU--------------ACAGCUGUAGCu -5'
8533 5' -52 NC_002169.1 + 4448 0.68 0.953941
Target:  5'- -gUGUCGGUGUCGGUaUCGuCAUCGu -3'
miRNA:   3'- cuGCAGCUACGGCUAcAGCuGUAGCu -5'
8533 5' -52 NC_002169.1 + 55977 0.68 0.949783
Target:  5'- cGGCGUU-AUGCCGugcGUGUCGGCAaUGAc -3'
miRNA:   3'- -CUGCAGcUACGGC---UACAGCUGUaGCU- -5'
8533 5' -52 NC_002169.1 + 6744 0.85 0.211086
Target:  5'- cGACGUCGAUGCCccUGcCGACGUCGAu -3'
miRNA:   3'- -CUGCAGCUACGGcuACaGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 124385 0.77 0.559946
Target:  5'- uGGCGUCGAUGgUGAguaugucgucuucGUCGGCAUCGAc -3'
miRNA:   3'- -CUGCAGCUACgGCUa------------CAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 60219 0.72 0.797814
Target:  5'- cGGCGgCGAUGUCGAUGaucUCGAauaAUCGAa -3'
miRNA:   3'- -CUGCaGCUACGGCUAC---AGCUg--UAGCU- -5'
8533 5' -52 NC_002169.1 + 107164 0.71 0.857909
Target:  5'- -uCGUCGAUGCCGccguUGUCGuACA-CGGa -3'
miRNA:   3'- cuGCAGCUACGGCu---ACAGC-UGUaGCU- -5'
8533 5' -52 NC_002169.1 + 75006 0.7 0.88061
Target:  5'- -cCGUCGAcaucgGCUGGaccGUCGACAUCGGc -3'
miRNA:   3'- cuGCAGCUa----CGGCUa--CAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 57759 0.69 0.930698
Target:  5'- cGACGUaaAUGUCGugcacGUCGGCGUCGGa -3'
miRNA:   3'- -CUGCAgcUACGGCua---CAGCUGUAGCU- -5'
8533 5' -52 NC_002169.1 + 28053 0.68 0.945382
Target:  5'- aGGCGaUCGAcgcgcucgUGCCGAUgGUCGGCAUg-- -3'
miRNA:   3'- -CUGC-AGCU--------ACGGCUA-CAGCUGUAgcu -5'
8533 5' -52 NC_002169.1 + 69800 0.68 0.945382
Target:  5'- uGAgGUCGGgcaCCGAUGUgGuCGUCGAg -3'
miRNA:   3'- -CUgCAGCUac-GGCUACAgCuGUAGCU- -5'
8533 5' -52 NC_002169.1 + 75188 0.8 0.400459
Target:  5'- cGAUGUCGAUgguccgGCCGAUGUCGACgguccagccgauGUCGAc -3'
miRNA:   3'- -CUGCAGCUA------CGGCUACAGCUG------------UAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.