Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8533 | 5' | -52 | NC_002169.1 | + | 77630 | 0.72 | 0.797814 |
Target: 5'- uGCGUCGAcGCCGAaccgUGUagcguccaCGGCGUCGAc -3' miRNA: 3'- cUGCAGCUaCGGCU----ACA--------GCUGUAGCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 127885 | 0.73 | 0.753959 |
Target: 5'- uGACGUUGAaacaucacucuuUGUCGAUGUCGucgcccucuucauuuACAUCGAa -3' miRNA: 3'- -CUGCAGCU------------ACGGCUACAGC---------------UGUAGCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 6945 | 0.75 | 0.689192 |
Target: 5'- cGGCaUCGAUGUCGAcaUCGGCAUCGAc -3' miRNA: 3'- -CUGcAGCUACGGCUacAGCUGUAGCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 75242 | 0.79 | 0.464457 |
Target: 5'- cGAUGUCGAUgguccaGCCGAUGUCGAUgguccggccgauGUCGAu -3' miRNA: 3'- -CUGCAGCUA------CGGCUACAGCUG------------UAGCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 81960 | 0.79 | 0.464457 |
Target: 5'- -uCGUCGGUGUcguCGAUGUCGACGUCa- -3' miRNA: 3'- cuGCAGCUACG---GCUACAGCUGUAGcu -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 75134 | 0.8 | 0.418172 |
Target: 5'- cGAUGUCGAUGguguaaCCGAUGUCGAUgauGUCGAc -3' miRNA: 3'- -CUGCAGCUAC------GGCUACAGCUG---UAGCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 44715 | 0.71 | 0.865699 |
Target: 5'- uGAUGUUGAUGuuGAcuauacUGUCGGCGgcggCGAa -3' miRNA: 3'- -CUGCAGCUACggCU------ACAGCUGUa---GCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 125258 | 0.7 | 0.894596 |
Target: 5'- --aGUCGAUGUCGAUuUCGAgAUCGc -3' miRNA: 3'- cugCAGCUACGGCUAcAGCUgUAGCu -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 43516 | 0.68 | 0.949783 |
Target: 5'- cACGUCGAUGCCGuaaAUGUUGcCcaagguguacguGUCGAu -3' miRNA: 3'- cUGCAGCUACGGC---UACAGCuG------------UAGCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 39532 | 0.68 | 0.95786 |
Target: 5'- cGACGgCGGUGCCGA--UCGGCAauaugagCGAc -3' miRNA: 3'- -CUGCaGCUACGGCUacAGCUGUa------GCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 97075 | 0.67 | 0.968231 |
Target: 5'- --gGUCGAcgcUGCCGAcggUGUCGACGaCGc -3' miRNA: 3'- cugCAGCU---ACGGCU---ACAGCUGUaGCu -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 55500 | 0.67 | 0.976645 |
Target: 5'- aGCG-CGAUGCCGccgccgcUGUCGuCGUCGu -3' miRNA: 3'- cUGCaGCUACGGCu------ACAGCuGUAGCu -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 48826 | 0.66 | 0.981262 |
Target: 5'- cGACGUCG-UGCaCGAUcUUGAUcUCGAa -3' miRNA: 3'- -CUGCAGCuACG-GCUAcAGCUGuAGCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 127612 | 0.66 | 0.985159 |
Target: 5'- uGACGaugauaUCGgcGCCGuUGUCGAagAUCGAg -3' miRNA: 3'- -CUGC------AGCuaCGGCuACAGCUg-UAGCU- -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 109392 | 0.66 | 0.986859 |
Target: 5'- cGACGUCGucguUGUCGucGUCGuCGUCGu -3' miRNA: 3'- -CUGCAGCu---ACGGCuaCAGCuGUAGCu -5' |
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8533 | 5' | -52 | NC_002169.1 | + | 75188 | 0.8 | 0.400459 |
Target: 5'- cGAUGUCGAUgguccgGCCGAUGUCGACgguccagccgauGUCGAc -3' miRNA: 3'- -CUGCAGCUA------CGGCUACAGCUG------------UAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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