miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8535 3' -44.8 NC_002169.1 + 42188 0.78 0.908909
Target:  5'- -gUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 11761 0.78 0.908909
Target:  5'- ----aUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119518 0.79 0.880098
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 11132 0.79 0.847071
Target:  5'- gUUUAaUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 120230 0.8 0.838209
Target:  5'- ----aUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 11173 0.8 0.838209
Target:  5'- ----aUGCaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 104833 0.8 0.819821
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 119616 0.8 0.819821
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 11012 0.8 0.819821
Target:  5'- gUUUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 42255 0.8 0.819821
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 105091 0.82 0.717424
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 104956 0.85 0.561795
Target:  5'- --cAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 53315 0.85 0.561795
Target:  5'- --cAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 53040 0.86 0.539898
Target:  5'- uUCUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 53123 0.87 0.465939
Target:  5'- --cAGUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105501 0.88 0.455795
Target:  5'- --cAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 52784 0.88 0.455795
Target:  5'- --cGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105026 0.9 0.370324
Target:  5'- ----cUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGAGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119602 0.9 0.370324
Target:  5'- --cAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 41772 0.9 0.352874
Target:  5'- ----aUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGAGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.